RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA498309" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA498309 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1756515 1756515 PRJNA498309_P_NODE_85922_length_232_cov_1.600000_g83773_i0 PRJNA498309 85922 232 1.6 3.712 Acholeplasma brassicae 61635 Bacteria Bacteria 231 2.48e-56   NTclustered gi|549142279|emb|FO681348.1| 61635 g83773 i0 86.321 31.2543103448276 212 29 91 0 21 232 553550 553339 complete chromosome Acholeplasma brassicae blastn 7251 231 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma brassicae
3031974 3031974 PRJNA498309_P_NODE_53283_length_359_cov_4.608696_g51135_i0 PRJNA498309 53283 359 4.608696 16.54521864 Ureaplasma sp. OM1 3119530 Bacteria Bacteria 171 1.06e-46   NR WP_353289783.1 3119530 g51135 i0 79.8 0.952646239554318 114 22 94.4 1 19 357 477 590 WP_353289783.1 endopeptidase La [Ureaplasma sp. OM1] diamond 342 171 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma ceti
29129922 29129922 PRJNA498309_P_NODE_78429_length_255_cov_12.582569_g76280_i0 PRJNA498309 78429 255 12.582569 32.08555095 Candidatus Izimaplasma bacterium ZiA1 2024899 Bacteria Bacteria 43.9 0.0087   NR PAT01761.1 2024899 g76280 i0 69.6 0.270588235294118 23 7 27.1 0 104 36 9 31 PAT01761.1 5-(carboxyamino)imidazole ribonucleotide mutase [Candidatus Izimaplasma bacterium ZiA1] diamond 69 43.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izimoplasma sp. ZiA1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;