RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA498309" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA498309 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9409528 9409528 PRJNA498309_P_NODE_87328_length_227_cov_5411.489474_g85179_i0 PRJNA498309 87328 227 5411.489474 12284.08110598 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.02   NTclustered gi|1789282585|gb|MK458088.1| 11676 g85179 i0 100 0.123348017621145 28 0 12 0 14 41 246 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
22158164 22158164 PRJNA498309_P_NODE_90058_length_219_cov_6265.725275_g87909_i0 PRJNA498309 90058 219 6265.725275 13721.93835225 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.005   NTclustered gi|1789282585|gb|MK458088.1| 11676 g87909 i0 100 0.26027397260274 29 0 26 0 23 51 245 273 HIV-1 isolate 074-A-106-1-6_w0_324 from Botswana, complete genome blastn 57 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;