RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA498309" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA498309 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5584912 5584912 PRJNA498309_P_NODE_74385_length_270_cov_1.330472_g72236_i0 PRJNA498309 74385 270 1.330472 3.5922744 Cryptosporidium hominis 237895 SAR_Eukaryotes SAR_Eukaryotes 361 3.619999999999999e-95   NTclustered gi|67586105|ref|XM_660074.1| 353151 g72236 i0 90.741 2 270 25 100 0 1 270 526 795 Cryptosporidium hominis TU502 sensor histidine kinase (Chro.00003) partial mRNA blastn 540 361 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis
9410487 9410487 PRJNA498309_S_NODE_41168_length_206_cov_1.970760_g39000_i0 PRJNA498309 41168 206 1.97076 4.0597656 Cryptosporidium hominis 237895 SAR_Eukaryotes SAR_Eukaryotes 320 4.47e-83   NTclustered gi|67586105|ref|XM_660074.1| 353151 g39000 i0 94.66 2 206 11 100 0 1 206 166 371 Cryptosporidium hominis TU502 sensor histidine kinase (Chro.00003) partial mRNA blastn 412 320 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis
10684139 10684139 PRJNA498309_P_NODE_26589_length_556_cov_23.298651_g24631_i0 PRJNA498309 26589 556 23.298651 129.54049956 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 830 0   NTclustered gi|820695469|tpe|LN714488.1| 572307 g24631 i0 94.444 46.2535971223022 540 29 97 1 1 539 51785 51246 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 25717 830 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
10686293 10686293 PRJNA498309_S_NODE_49089_length_169_cov_1.791045_g46921_i0 PRJNA498309 49089 169 1.791045 3.02686605 Cryptosporidium hominis 237895 SAR_Eukaryotes SAR_Eukaryotes 231 1.6899999999999998e-56   NTclustered gi|67586105|ref|XM_660074.1| 353151 g46921 i0 95.833 1.69230769230769 144 5 85 1 2 144 190 47 Cryptosporidium hominis TU502 sensor histidine kinase (Chro.00003) partial mRNA blastn 286 231 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis
11960250 11960250 PRJNA498309_P_NODE_88350_length_225_cov_1.106383_g86201_i0 PRJNA498309 88350 225 1.106383 2.48936175 Plasmodium berghei 5821 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|1843569438|ref|XM_034564364.1| 5823 g86201 i0 100 0.128888888888889 29 0 13 0 188 216 239 211 Plasmodium berghei ANKA conserved Plasmodium protein, unknown function (PBANKA_0819600), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
15784920 15784920 PRJNA498309_S_NODE_32693_length_271_cov_3.682203_g30525_i0 PRJNA498309 32693 271 3.682203 9.97877013 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 425 1.27e-114   NTclustered gi|820695469|tpe|LN714488.1| 572307 g30525 i0 97.222 2.81180811808118 252 6 93 1 1 251 117281 117532 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 762 425 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
20882405 20882405 PRJNA498309_P_NODE_23897_length_590_cov_48.159132_g21989_i0 PRJNA498309 23897 590 48.159132 284.1388788 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 593 7.729999999999998e-165   NTclustered gi|820695469|tpe|LN714488.1| 572307 g21989 i0 90.646 38.7576271186441 449 39 95 3 113 558 302448 302000 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 22867 593 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
30203148 30203148 PRJNA498309_P_NODE_65232_length_304_cov_10.677903_g63084_i0 PRJNA498309 65232 304 10.677903 32.46082512 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0302   NR XP_067181760.1 310047 g63084 i0 47.1 0.503289473684211 51 25 48.4 1 178 32 370 420 XP_067181760.1 interaptin [Cryptosporidium bovis] diamond 153 43.9 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;