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contig_metadata

15 rows where bioproject = "PRJNA498309", tax_kingdom = "Orthornavirae" and tax_phylum = "Pisuviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 15 ✖

tax_kingdom 1

  • Orthornavirae · 15 ✖

bioproject 1

  • PRJNA498309 · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3030985 3030985 PRJNA498309_P_NODE_105563_length_181_cov_40.020833_g103414_i0 PRJNA498309 105563 181 40.020833 72.43770773 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 54.7 0.004   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g103414 i0 100 0.160220994475138 29 0 16 0 1 29 58 86 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
8134377 8134377 PRJNA498309_P_NODE_74347_length_270_cov_1.708155_g72198_i0 PRJNA498309 74347 270 1.708155 4.6120185 Sclerotinia sclerotiorum hypovirus 9 2879905 Viruses Viruses 388 1.66e-103   NTclustered gi|2111886846|gb|MW454884.1| 2879905 g72198 i0 92.62 1.0037037037037 271 19 100 1 1 270 9991 10261 Sclerotinia sclerotiorum hypovirus 9 isolate GB375-1 polyprotein gene, complete cds blastn 271 388 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Hypoviridae Hypovirus Sclerotinia sclerotiorum hypovirus 9
9408940 9408940 PRJNA498309_P_NODE_50528_length_373_cov_7.636905_g48382_i0 PRJNA498309 50528 373 7.636905 28.485655650000002 Porcine bastrovirus 2588662 Viruses Viruses 52.8 0.035   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g48382 i0 100 0.0750670241286863 28 0 8 0 346 373 42 15 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
9409303 9409303 PRJNA498309_P_NODE_72148_length_277_cov_44.712500_g69999_i0 PRJNA498309 72148 277 44.7125 123.853625 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 54.7 0.007   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g69999 i0 100 0.104693140794224 29 0 10 0 1 29 58 86 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
13234688 13234688 PRJNA498309_P_NODE_48711_length_383_cov_8.664740_g46573_i0 PRJNA498309 48711 383 8.66474 33.1859542 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 52.8 0.037   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g46573 i0 100 0.0731070496083551 28 0 7 0 356 383 86 59 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
15784571 15784571 PRJNA498309_S_NODE_18553_length_489_cov_11.693833_g16482_i0 PRJNA498309 18553 489 11.693833 57.18284337 Sclerotinia sclerotiorum hypovirus 9 2879905 Viruses Viruses 614 4.849999999999999e-171   NTclustered gi|2111886846|gb|MW454884.1| 2879905 g16482 i0 91.667 0.907975460122699 444 36 91 1 26 468 10268 9825 Sclerotinia sclerotiorum hypovirus 9 isolate GB375-1 polyprotein gene, complete cds blastn 444 614 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Hypoviridae Hypovirus Sclerotinia sclerotiorum hypovirus 9
15784877 15784877 PRJNA498309_S_NODE_30693_length_293_cov_1.461240_g28525_i0 PRJNA498309 30693 293 1.46124 4.2814332 Nepovirus alphaparis 3431076 Viruses Viruses 52.8 0.027   NTclustered gi|2392416652|gb|OP374158.1| 3002895 g28525 i0 100 0.0955631399317406 28 0 10 0 2 29 1 28 Paris nepovirus 1 isolate YLJ segment RNA 1, complete sequence blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus alphaparis
16411849 16411849 PRJNA498309_P_NODE_81833_length_244_cov_157.347826_g79684_i0 PRJNA498309 81833 244 157.347826 383.92869544 Norovirus 142786 Viruses Viruses 298 2.56e-76   NTclustered gi|436410|emb|X76716.1| 11974 g79684 i0 100 89.2868852459016 161 0 90 0 59 219 1428 1268 Caliciviridae mRNA for capsid protein, ORF2 and ORF3 blastn 21786 298 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae    
20882867 20882867 PRJNA498309_P_NODE_49557_length_379_cov_2.324561_g47416_i0 PRJNA498309 49557 379 2.324561 8.81008619 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.003   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g47416 i0 100 0.153034300791557 30 0 8 0 350 379 42 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
20883586 20883586 PRJNA498309_P_NODE_96117_length_203_cov_21.560241_g93968_i0 PRJNA498309 96117 203 21.560241 43.76728923 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.005   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g93968 i0 100 0.280788177339901 29 0 14 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
20884038 20884038 PRJNA498309_S_NODE_23017_length_400_cov_165.101370_g20865_i0 PRJNA498309 23017 400 165.10137 660.40548 Sclerotinia sclerotiorum hypovirus 9 2879905 Viruses Viruses 451 3.2300000000000004e-122   NTclustered gi|2111886846|gb|MW454884.1| 2879905 g20865 i0 89.773 0.88 352 36 88 0 12 363 10616 10967 Sclerotinia sclerotiorum hypovirus 9 isolate GB375-1 polyprotein gene, complete cds blastn 352 451 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Hypoviridae Hypovirus Sclerotinia sclerotiorum hypovirus 9
23433554 23433554 PRJNA498309_P_NODE_62259_length_317_cov_21.560714_g60111_i0 PRJNA498309 62259 317 21.560714 68.34746338 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.008   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g60111 i0 100 0.17981072555205 29 0 9 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
23433950 23433950 PRJNA498309_P_NODE_88719_length_223_cov_86.059140_g86570_i0 PRJNA498309 88719 223 86.05914 191.9118822 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 54.7 0.006   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g86570 i0 100 0.130044843049327 29 0 13 0 195 223 86 58 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
24707177 24707177 PRJNA498309_P_NODE_74140_length_270_cov_14.287554_g71991_i0 PRJNA498309 74140 270 14.287554 38.5763958 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.002   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g71991 i0 100 0.21481481481481501 30 0 11 0 241 270 42 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
30961764 30961764 PRJNA498309_P_NODE_101854_length_190_cov_1.045752_g99705_i0 PRJNA498309 101854 190 1.045752 1.9869288 Patatavirales sp. 2809655 Viruses Viruses 65.5 1.72e-10   NR WRQ64747.1 2809655 g99705 i0 57.7 3.94736842105263 52 22 82.1 0 21 176 165 216 WRQ64747.1 polyprotein 2 [Patatavirales sp.] diamond 750 65.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales     Patatavirales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;