RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA498309", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA498309 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20884575 20884575 PRJNA498309_S_NODE_4937_length_1331_cov_8.550926_g3606_i0 PRJNA498309 4937 1331 8.550926 113.81282506 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 195 1.3899999999999995e-55   NR OGQ51540.1 1797882 g3606 i0 52.7 0.42374154770849 188 87 41.9 2 749 1306 1 188 OGQ51540.1 MAG: P-type conjugative transfer protein TrbJ [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 564 195 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8
29524097 29524097 PRJNA498309_P_NODE_24870_length_578_cov_15.977819_g22943_i0 PRJNA498309 24870 578 15.977819 92.35179382 Bacteria 2 Bacteria Bacteria 98.2 1.47e-20   NR OPL11247.1 1775672 g22943 i0 58.6 1.41176470588235 70 29 36.3 0 230 21 183 252 OPL11247.1 MAG: hypothetical protein AVO38_15970 [delta proteobacterium ML8_D] diamond 816 98.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium ML8_D
31024996 31024996 PRJNA498309_P_NODE_83775_length_238_cov_3.452736_g81626_i0 PRJNA498309 83775 238 3.452736 8.21751168 Deltaproteobacteria bacterium RBG_16_44_11 1797837 Bacteria Bacteria 66.2 1.59e-10   NR OGP66361.1 1797837 g81626 i0 41.9 1.90336134453782 74 43 93.3 0 232 11 156 229 OGP66361.1 MAG: hypothetical protein A2W27_01115 [Deltaproteobacteria bacterium RBG_16_44_11] diamond 453 66.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_44_11
32606239 32606239 PRJNA498309_P_NODE_5920_length_1327_cov_7.132558_g4775_i0 PRJNA498309 5920 1327 7.132558 94.64904466 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 195 1.3599999999999996e-55   NR OGQ51540.1 1797882 g4775 i0 52.7 0.425018839487566 188 87 42 2 748 1305 1 188 OGQ51540.1 MAG: P-type conjugative transfer protein TrbJ [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 564 195 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;