RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA498309", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA498309 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6213129 6213129 PRJNA498309_S_NODE_38325_length_223_cov_343.941489_g36157_i0 PRJNA498309 38325 223 343.941489 766.98952047 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 335 1.7599999999999994e-87   NTclustered gi|1564356933|gb|MK443533.1| 205931 g36157 i0 98.936 84.3183856502242 188 1 84 1 36 223 304 118 Uncultured Pythium clone OTUA4430 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 18803 335 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales     uncultured Pythium
8761330 8761330 PRJNA498309_P_NODE_104867_length_183_cov_1.979452_g102718_i0 PRJNA498309 104867 183 1.979452 3.62239716 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 300 5.040000000000001e-77   NTclustered gi|1564356933|gb|MK443533.1| 205931 g102718 i0 99.394 90.1803278688525 165 1 90 0 19 183 304 140 Uncultured Pythium clone OTUA4430 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 16503 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales     uncultured Pythium
13234305 13234305 PRJNA498309_P_NODE_25631_length_568_cov_8.549906_g23688_i0 PRJNA498309 25631 568 8.549906 48.56346608 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 950 0   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g23688 i0 97.996 100.535211267606 549 7 96 2 1 547 9497 10043 Pythium ultimum mitochondrion, complete genome blastn 57104 950 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;