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contig_metadata

13 rows where bioproject = "PRJNA498309", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 13 ✖

bioproject 1

  • PRJNA498309 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3031947 3031947 PRJNA498309_P_NODE_51983_length_366_cov_3.273556_g49835_i0 PRJNA498309 51983 366 3.273556 11.98121496 Nematoda environmental sample 554024 Nematoda Nematoda 529 1.3199999999999996e-145   NTclustered gi|1199928069|gb|KY822600.1| 554024 g49835 i0 96.061 90.2213114754098 330 3 90 1 23 352 25 344 Nematoda environmental sample clone OTUNR113 18S ribosomal RNA gene, partial sequence blastn 33021 529 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
5585115 5585115 PRJNA498309_P_NODE_88765_length_223_cov_4.069892_g86616_i0 PRJNA498309 88765 223 4.069892 9.07585916 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g86616 i0 100 0.125560538116592 28 0 13 0 196 223 53 26 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9410216 9410216 PRJNA498309_S_NODE_26728_length_343_cov_9.094156_g24560_i0 PRJNA498309 26728 343 9.094156 31.19295508 Pristionchus pacificus 54126 Nematoda Nematoda 139 2.42e-28   NTclustered gi|256861442|gb|GQ422181.1| 54126 g24560 i0 81.356 2.2069970845481 177 27 51 6 134 307 531 358 Pristionchus pacificus large subunit ribosomal protein 9 (rpl-9) mRNA, partial cds blastn 757 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
10684048 10684048 PRJNA498309_P_NODE_22329_length_612_cov_11.106087_g20458_i0 PRJNA498309 22329 612 11.106087 67.96925244 Acrostichus sp. RS5083 669107 Nematoda Nematoda 874 0   NTclustered gi|410992296|gb|JX163971.1| 669107 g20458 i0 93.825 87.2630718954248 583 32 95 4 22 602 1597 2177 Acrostichus sp. RS5083 28S ribosomal RNA gene, partial sequence blastn 53405 874 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. RS5083
11312479 11312479 PRJNA498309_P_NODE_99589_length_195_cov_1.708861_g97440_i0 PRJNA498309 99589 195 1.708861 3.33227895 Rhabditida 6236 Nematoda Nematoda 84.2 5.97e-12   NTclustered gi|256861442|gb|GQ422181.1| 54126 g97440 i0 96.078 1.22051282051282 51 2 26 0 10 60 481 531 Pristionchus pacificus large subunit ribosomal protein 9 (rpl-9) mRNA, partial cds blastn 238 84.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
11959778 11959778 PRJNA498309_P_NODE_58270_length_335_cov_3.993289_g56122_i0 PRJNA498309 58270 335 3.993289 13.37751815 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.032   NTclustered gi|1557394408|emb|LR031564.1| 45931 g56122 i0 100 0.0835820895522388 28 0 8 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
19606009 19606009 PRJNA498309_P_NODE_108516_length_175_cov_54.768116_g106367_i0 PRJNA498309 108516 175 54.768116 95.844203 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.015   NTclustered gi|1557394408|emb|LR031564.1| 45931 g106367 i0 100 0.16 28 0 16 0 148 175 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
22157712 22157712 PRJNA498309_P_NODE_58438_length_334_cov_13.973064_g56290_i0 PRJNA498309 58438 334 13.973064 46.67003376 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.031   NTclustered gi|1557394408|emb|LR031564.1| 45931 g56290 i0 100 0.0838323353293413 28 0 8 0 307 334 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26697095 26697095 PRJNA498309_P_NODE_99441_length_195_cov_2.544304_g97292_i0 PRJNA498309 99441 195 2.544304 4.9613928 Dracunculus medinensis 318479 Nematoda Nematoda 46.6 8.64e-4   NR VDN56879.1 318479 g97292 i0 43.9 2.01538461538462 41 23 63.1 0 11 133 409 449 VDN56879.1 unnamed protein product, partial [Dracunculus medinensis] diamond 393 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
30298634 30298634 PRJNA498309_P_NODE_100172_length_193_cov_23.397436_g98023_i0 PRJNA498309 100172 193 23.397436 45.15705148 Wuchereria bancrofti 6293 Nematoda Nematoda 64.7 6.12e-11   NR VDM13183.1 6293 g98023 i0 57.1 0.761658031088083 49 21 76.2 0 169 23 126 174 VDM13183.1 unnamed protein product [Wuchereria bancrofti] diamond 147 64.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
31546445 31546445 PRJNA498309_P_NODE_13276_length_815_cov_7.830334_g11692_i0 PRJNA498309 13276 815 7.830334 63.8172221 Rhabditida 6236 Nematoda Nematoda 305 4.32e-100   NR KAK5969630.1 6319 g11692 i0 66.5 5.25276073619632 239 79 88 1 793 77 81 318 KAK5969630.1 hypothetical protein GCK32_013408 [Trichostrongylus colubriformis] diamond 4281 307 0.993485342019544 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
31815398 31815398 PRJNA498309_P_NODE_21017_length_632_cov_6.961345_g19173_i0 PRJNA498309 21017 632 6.961345 43.9957004 Toxocara canis 6265 Nematoda Nematoda 47.8 0.0216   NR VDM37845.1 6265 g19173 i0 52 0.693037974683544 50 23 23.7 1 598 449 41 89 VDM37845.1 unnamed protein product [Toxocara canis] diamond 438 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31941802 31941802 PRJNA498309_P_NODE_84037_length_237_cov_8.410000_g81888_i0 PRJNA498309 84037 237 8.41 19.9317 Brugia timori 42155 Nematoda Nematoda 43.9 0.00341   NR VDO07295.1 42155 g81888 i0 39.4 1.26582278481013 66 31 83.5 1 29 226 48 104 VDO07295.1 unnamed protein product [Brugia timori] diamond 300 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia timori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;