RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA498309", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA498309 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10037275 10037275 PRJNA498309_P_NODE_34748_length_476_cov_17.974943_g32705_i0 PRJNA498309 34748 476 17.974943 85.56072868 Rubrivirga 1434037 Bacteria Bacteria 510 6.36e-140   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g32705 i0 87.09 179.955882352941 457 51 95 8 24 476 805389 805841 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 85659 510 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
26633828 26633828 PRJNA498309_P_NODE_78401_length_256_cov_1.242009_g76252_i0 PRJNA498309 78401 256 1.242009 3.17954304 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 45.8 0.00135   NR WP_166974268.1 2558931 g76252 i0 65.7 0.85546875 35 12 41 0 256 152 98 132 WP_166974268.1 F0F1 ATP synthase subunit epsilon [Rhodocaloribacter litoris] diamond 219 45.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;