RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA498309", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA498309 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
480141 480141 PRJNA498309_P_NODE_111481_length_170_cov_1.406015_g109332_i0 PRJNA498309 111481 170 1.406015 2.3902255 soil amoeba AND9 328341 Heterolobosea other_Eukaryota 302 1.28e-77   NTclustered gi|65306218|gb|AY965861.1| 328341 g109332 i0 98.824 85.2529411764706 170 0 100 2 1 170 1491 1658 Soil amoeba AND9 18S ribosomal RNA gene, partial sequence blastn 14493 302 1 Eukaryota Discoba   Heterolobosea         soil amoeba AND9
481213 481213 PRJNA498309_P_NODE_66941_length_297_cov_46.623077_g64793_i0 PRJNA498309 66941 297 46.623077 138.47053869 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 283 8.989999999999999e-72   NTclustered gi|2031941688|emb|OD957957.1| 5763 g64793 i0 93.651 0.636363636363636 189 12 64 0 109 297 323 135 Naegleria fowleri Karachi_NF001 strain blastn 189 283 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
10685128 10685128 PRJNA498309_P_NODE_83549_length_239_cov_2.509901_g81400_i0 PRJNA498309 83549 239 2.509901 5.99866339 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 130 9.65e-26   NTclustered gi|2031941093|emb|OD957822.1| 5763 g81400 i0 78.365 3.48117154811716 208 39 87 2 1 207 62 264 Naegleria fowleri Karachi_NF001 strain blastn 832 130 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
15783009 15783009 PRJNA498309_P_NODE_20073_length_648_cov_13.119476_g18259_i0 PRJNA498309 20073 648 13.119476 85.01420448 Acrasis kona 1008807 Heterolobosea other_Eukaryota 109 1.41e-24   NR KAL0478636.1 1008807 g18259 i0 51.6 1.13888888888889 122 55 55.6 3 48 407 169 288 KAL0478636.1 hypothetical protein AKO1_005035 [Acrasis kona] diamond 738 109 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
15784044 15784044 PRJNA498309_P_NODE_82153_length_244_cov_1.120773_g80004_i0 PRJNA498309 82153 244 1.120773 2.73468612 Paravahlkampfia ustiana 166958 Heterolobosea other_Eukaryota 440 4.019999999999999e-119   NTclustered gi|1121487417|gb|KX068999.1| 166958 g80004 i0 99.18 12.8155737704918 244 2 100 0 1 244 739 982 Paravahlkampfia ustiana strain ST-39 18S ribosomal RNA gene, partial sequence blastn 3127 440 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Paravahlkampfia Paravahlkampfia ustiana
20236104 20236104 PRJNA498309_S_NODE_38296_length_224_cov_1.814815_g36128_i0 PRJNA498309 38296 224 1.814815 4.0651856 root 1 Root_unresolved Root_unresolved 75 4.25e-9   NTclustered gi|2031934279|emb|OD956844.1| 5763 g36128 i0 95.745 13.8482142857143 47 1 21 1 1 47 3241 3286 Naegleria fowleri Karachi_NF001 strain blastn 3102 75 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
22157531 22157531 PRJNA498309_P_NODE_46618_length_395_cov_5.726257_g44482_i0 PRJNA498309 46618 395 5.726257 22.61871515 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 614 3.839999999999999e-171   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g44482 i0 99.123 69.7113924050633 342 2 86 1 23 363 2720 3061 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27536 614 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;