RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA498309", tax_clade = "Caldisericota/Cryosericota group" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Caldisericota/Cryosericota group · 3 ✖

bioproject 1

  • PRJNA498309 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13235035 13235035 PRJNA498309_P_NODE_70611_length_283_cov_7.837398_g68462_i0 PRJNA498309 70611 283 7.837398 22.17983634 Pseudomonadati 3379134 Bacteria Bacteria 63.9 5.38e-11   NR MCR4433944.1 2052147 g68462 i0 69.6 1.46289752650177 46 14 48.8 0 139 2 7 52 MCR4433944.1 hypothetical protein [Caldisericota bacterium] diamond 414 63.9 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota         Caldisericota bacterium
20235221 20235221 PRJNA498309_P_NODE_36976_length_459_cov_9.045024_g34913_i0 PRJNA498309 36976 459 9.045024 41.51666016 Caldisericum sp. AR60 3397852 Bacteria Bacteria 120 7.62e-29   NR WP_416085255.1 3397852 g34913 i0 43.8 0.954248366013072 146 80 95.4 1 440 3 23 166 WP_416085255.1 zinc ribbon domain-containing protein [Caldisericum sp. AR60] diamond 438 120 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales Caldisericaceae Caldisericum Caldisericum sp. AR60
27139862 27139862 PRJNA498309_P_NODE_34682_length_477_cov_3.438636_g32639_i0 PRJNA498309 34682 477 3.438636 16.40229372 Caldisericum sp. 2499687 Bacteria Bacteria 92.4 7.97e-19   NR MCI4463313.1 2499687 g32639 i0 36 1.85534591194969 150 90 93.7 3 18 464 38 182 MCI4463313.1 hypothetical protein [Caldisericum sp.] diamond 885 92.4 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales Caldisericaceae Caldisericum Caldisericum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;