RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA498309", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA498309 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31088069 31088069 PRJNA498309_P_NODE_122755_length_151_cov_1.359649_g120606_i0 PRJNA498309 122755 151 1.359649 2.05306999 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 70.9 1.28e-12   NR MCF7843810.1 2044595 g120606 i0 68 0.993377483443709 50 16 99.3 0 150 1 950 999 MCF7843810.1 DNA polymerase III subunit alpha [Candidatus Altimarinota bacterium] diamond 150 70.9 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31878519 31878519 PRJNA498309_P_NODE_109677_length_173_cov_2.580882_g107528_i0 PRJNA498309 109677 173 2.580882 4.46492586 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 50.4 2.71e-5   NR MFK7779564.1 2044595 g107528 i0 90.9 0.763005780346821 22 2 38.2 0 81 146 22 43 MFK7779564.1 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [Candidatus Altimarinota bacterium] diamond 132 50.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;