RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA495917", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA495917 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17054922 17054922 PRJNA495917_S_NODE_7954_length_188_cov_48.300654_g7760_i0 PRJNA495917 7954 188 48.300654 90.80522952 Geomonas subterranea 2847989 Bacteria Bacteria 174 3.3e-39   NTclustered gi|2060227305|gb|CP077683.1| 2847989 g7760 i0 86.335 241.712765957447 161 20 85 1 29 187 2777185 2777345 Geomonas subterranea strain RG2 chromosome, complete genome blastn 45442 174 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas subterranea
18329145 18329145 PRJNA495917_S_NODE_295_length_780_cov_29.989262_g185_i0 PRJNA495917 295 780 29.989262 233.9162436 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 309 4.2e-79   NTclustered gi|2556892445|gb|CP129479.1| 2202153 g185 i0 77.449 106.338461538462 541 106 69 14 246 780 886705 887235 MAG: Thermodesulfobacteriota bacterium isolate cMAG.17 chromosome, complete genome blastn 82944 309 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
19603419 19603419 PRJNA495917_S_NODE_15956_length_152_cov_1.367521_g15762_i0 PRJNA495917 15956 152 1.367521 2.07863192 Geobacter sp. SVR 2495594 Bacteria Bacteria 56.5 0.001   NTclustered gi|1976315905|dbj|AP024469.1| 2495594 g15762 i0 83.333 0.434210526315789 66 5 41 4 75 137 831769 831707 Geobacter sp. SVR DNA, complete genome blastn 66 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. SVR
22785086 22785086 PRJNA495917_S_NODE_898_length_494_cov_25.071895_g16_i2 PRJNA495917 898 494 25.071895 123.8551613 Desulfobulbaceae 213121 Bacteria Bacteria 339 3.3099999999999997e-88   NTclustered gi|2621704320|emb|OY760916.1| 239745 g16 i2 79.762 551.609311740891 504 73 99 26 1 492 394853 395339 MAG: uncultured Desulfobulbus sp. isolate 7a05128d-adad-4d17-beb6-ff3d102eb21b genome assembly, chromosome: 1 blastn 272495 339 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus uncultured Desulfobulbus sp.
27266673 27266673 PRJNA495917_S_NODE_6563_length_202_cov_1.197605_g6369_i0 PRJNA495917 6563 202 1.197605 2.4191621 Megalodesulfovibrio gigas 879 Bacteria Bacteria 67.4 4.27e-11   NR WP_051286656.1 879 g6369 i0 55.6 0.935643564356436 63 28 93.6 0 200 12 131 193 WP_051286656.1 FkbM family methyltransferase [Megalodesulfovibrio gigas] diamond 189 67.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Megalodesulfovibrio Megalodesulfovibrio gigas
28040156 28040156 PRJNA495917_S_NODE_8245_length_186_cov_1.589404_g8051_i0 PRJNA495917 8245 186 1.589404 2.95629144 Pseudomonadati 3379134 Bacteria Bacteria 53.5 2.68e-6   NR MBI5519820.1 885 g8051 i0 49.2 3.46774193548387 61 28 95.2 2 6 182 627 686 MBI5519820.1 DNA polymerase I [Desulfovibrio sp.] diamond 645 53.9 0.992578849721707 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;