RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA495917" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA495917 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10036480 10036480 PRJNA495917_S_NODE_7088_length_196_cov_15.708075_g6894_i0 PRJNA495917 7088 196 15.708075 30.787827 Fusobacterium 848 Bacteria Bacteria 294 2.55e-75   NTclustered gi|2705042081|gb|CP085192.1| 856 g6894 i0 93.878 474.489795918367 196 11 100 1 1 196 156839 157033 Fusobacterium varium strain SB069 chromosome blastn 93000 294 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
17685710 17685710 PRJNA495917_S_NODE_2994_length_283_cov_17.810484_g2800_i0 PRJNA495917 2994 283 17.810484 50.40366972 Cetobacterium 180162 Bacteria Bacteria 475 1.3099999999999999e-129   NTclustered gi|2865368125|gb|CP122294.1| 188913 g2800 i0 97.163 502.116607773852 282 7 99 1 3 283 278657 278376 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 142099 475 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
19603399 19603399 PRJNA495917_S_NODE_14896_length_155_cov_1.416667_g14702_i0 PRJNA495917 14896 155 1.416667 2.19583385 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 276 6.95e-70   NTclustered gi|922689899|gb|CP012410.1| 712357 g14702 i0 98.71 5 155 2 100 0 1 155 51889 52043 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 775 276 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
24703507 24703507 PRJNA495917_S_NODE_5200_length_221_cov_3.704301_g5006_i0 PRJNA495917 5200 221 3.704301 8.18650521 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 359 1.03e-94   NTclustered gi|922689899|gb|CP012410.1| 712357 g5006 i0 95.946 486.588235294118 222 7 100 2 1 221 52286 52506 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 107536 359 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;