RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA495917", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA495917 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7485924 7485924 PRJNA495917_S_NODE_12706_length_162_cov_1.456693_g12512_i0 PRJNA495917 12706 162 1.456693 2.35984266 Chloroflexota 200795 Bacteria Bacteria 226 7.509999999999998e-55   NTclustered gi|2531976033|emb|OY282371.1| 498747 g12512 i0 92.453 98.4444444444444 159 11 98 1 1 159 2343527 2343684 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 15948 226 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
17054801 17054801 PRJNA495917_S_NODE_1394_length_399_cov_32.733516_g1200_i0 PRJNA495917 1394 399 32.733516 130.60672884 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 257 7.55e-64   NTclustered gi|2575820385|emb|OY730488.1| 2026734 g1200 i0 78.934 295.917293233083 394 72 97 10 13 399 1464988 1465377 MAG: Dehalococcoidia bacterium isolate c17ab466-9012-4dfd-ba8a-0af8548777ee genome assembly, chromosome: 1 blastn 118071 257 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30234942 30234942 PRJNA495917_S_NODE_3812_length_252_cov_1.815668_g3618_i0 PRJNA495917 3812 252 1.815668 4.57548336 Chloroflexota bacterium 2026724 Bacteria Bacteria 89.7 2.42e-19   NR MFC1943052.1 2026724 g3618 i0 59 1.97619047619048 83 31 98.8 1 250 2 101 180 MFC1943052.1 oxaloacetate decarboxylase [Chloroflexota bacterium] diamond 498 89.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30361805 30361805 PRJNA495917_S_NODE_14652_length_156_cov_0.991736_g14458_i0 PRJNA495917 14652 156 0.991736 1.54710816 Anaerolineae bacterium 2052143 Bacteria Bacteria 79.3 1.46e-15   NR MCL6509816.1 2052143 g14458 i0 61.5 1 52 20 100 0 156 1 171 222 MCL6509816.1 conjugal transfer protein TrbE [Anaerolineae bacterium] diamond 156 79.3 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;