RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA495917", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA495917 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3659160 3659160 PRJNA495917_S_NODE_9463_length_178_cov_1.174825_g9269_i0 PRJNA495917 9463 178 1.174825 2.0911885 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 313 6.259999999999999e-81   NTclustered gi|1238675774|gb|MF783088.1| 4784 g9269 i0 100 94.9438202247191 169 0 95 0 1 169 927 759 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 16900 313 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
9405407 9405407 PRJNA495917_S_NODE_14408_length_156_cov_2.743802_g14214_i0 PRJNA495917 14408 156 2.743802 4.28033112 Peronospora boni-henrici 162100 SAR_Eukaryotes SAR_Eukaryotes 283 4.1899999999999994e-72   NTclustered gi|33520207|gb|AY273952.1| 162100 g14214 i0 99.359 100.00641025641 156 1 100 0 1 156 54 209 Peronospora boni-henrici large subunit ribosomal RNA gene, partial sequence blastn 15601 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora boni-henrici
20879316 20879316 PRJNA495917_S_NODE_14817_length_155_cov_1.983333_g14623_i0 PRJNA495917 14817 155 1.983333 3.07416615 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 193 7.2e-45   NTclustered gi|325195820|emb|FR826611.1| 890382 g14623 i0 92.029 25.7548387096774 138 10 89 1 2 139 74 210 Albugo laibachii Nc14, genomic contig CONTIG_3778_NC14_v4_313_8 blastn 3992 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;