RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA495917", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA495917 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2383518 2383518 PRJNA495917_S_NODE_8002_length_188_cov_2.032680_g7808_i0 PRJNA495917 8002 188 2.03268 3.8214384 Stenostomum 39238 Platyhelminthes Platyhelminthes 342 8.539999999999999e-90   NTclustered gi|209968707|gb|FJ384870.1| 52061 g7808 i0 99.468 48.5053191489362 188 1 100 0 1 188 53 240 Stenostomum leucops isolate K05_55 28S ribosomal RNA gene, partial sequence blastn 9119 342 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
24703490 24703490 PRJNA495917_S_NODE_3440_length_264_cov_26.196507_g3246_i0 PRJNA495917 3440 264 26.196507 69.15877848 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 414 2.6699999999999998e-111   NTclustered gi|28273263|gb|AY157151.1| 52061 g3246 i0 99.13 59.3825757575758 230 2 87 0 35 264 2946 2717 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 15677 414 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
29697541 29697541 PRJNA495917_S_NODE_5510_length_216_cov_2.790055_g5316_i0 PRJNA495917 5510 216 2.790055 6.0265188 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 129 2.09e-33   NR AAX28387.3 6182 g5316 i0 97.2 25.6388888888889 71 2 98.6 0 214 2 348 418 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 5538 130 0.992307692307692 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
31657068 31657068 PRJNA495917_S_NODE_11097_length_169_cov_2.059701_g10903_i0 PRJNA495917 11097 169 2.059701 3.48089469 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 108 8.270000000000001e-26   NR AAX28387.3 6182 g10903 i0 98.2 3.90532544378698 55 1 97.6 0 3 167 223 277 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 660 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;