RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJNA495917" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 13 ✖

bioproject 1

  • PRJNA495917 · 13 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
477557 477557 PRJNA495917_S_NODE_421_length_685_cov_6.883077_g289_i0 PRJNA495917 421 685 6.883077 47.14907745 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 1122 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g289 i0 96.21 57.956204379562 686 24 100 2 1 685 3573 2889 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 39700 1122 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
1107853 1107853 PRJNA495917_S_NODE_5501_length_216_cov_6.850829_g5307_i0 PRJNA495917 5501 216 6.850829 14.79779064 Naegleria 5761 Heterolobosea other_Eukaryota 143 1.1e-29   NTclustered gi|2618963742|gb|OR769034.1| 5762 g5307 i0 83.66 9.01388888888889 153 24 71 1 1 153 5077 5228 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1947 143 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
1752367 1752367 PRJNA495917_S_NODE_10422_length_172_cov_5.029197_g10228_i0 PRJNA495917 10422 172 5.029197 8.65021884 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 318 1.2899999999999999e-82   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g10228 i0 100 61.3372093023256 172 0 100 0 1 172 694 865 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 10550 318 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
6211436 6211436 PRJNA495917_S_NODE_985_length_474_cov_7.047836_g793_i0 PRJNA495917 985 474 7.047836 33.40674264 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 874 0   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g793 i0 100 30.0822784810127 473 0 99 0 1 473 37 509 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 14259 874 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
9405498 9405498 PRJNA495917_S_NODE_5628_length_214_cov_3.553073_g5434_i0 PRJNA495917 5628 214 3.553073 7.60357622 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 351 1.66e-92   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g5434 i0 96.262 3.42523364485981 214 8 100 0 1 214 4158 4371 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 733 351 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
11956300 11956300 PRJNA495917_S_NODE_770_length_529_cov_7.878543_g593_i0 PRJNA495917 770 529 7.878543 41.67749247 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 917 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g593 i0 97.921 7.1758034026465 529 11 100 0 1 529 1928 2456 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3796 917 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12586874 12586874 PRJNA495917_S_NODE_2130_length_334_cov_7.103679_g1936_i0 PRJNA495917 2130 334 7.103679 23.72628786 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 606 5.359999999999998e-169   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g1936 i0 99.401 88.1706586826347 334 2 100 0 1 334 1374 1041 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 29449 606 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
13231392 13231392 PRJNA495917_S_NODE_5251_length_220_cov_8.194595_g5057_i0 PRJNA495917 5251 220 8.194595 18.028109 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 407 3.61e-109   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g5057 i0 100 38.5909090909091 220 0 100 0 1 220 848 1067 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 8490 407 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
18959490 18959490 PRJNA495917_S_NODE_2975_length_284_cov_4.216867_g2781_i0 PRJNA495917 2975 284 4.216867 11.97590228 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 100 9.23e-17   NTclustered gi|560190589|gb|KF633467.1| 91374 g2781 i0 86 29.4683098591549 100 6 35 6 26 123 2475 2568 Diplonema papillatum strain ATCC 50162 28S ribosomal RNA gene, complete sequence blastn 8369 100 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
19603451 19603451 PRJNA495917_S_NODE_3056_length_281_cov_2.780488_g2862_i0 PRJNA495917 3056 281 2.780488 7.81317128 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 514 2.75e-141   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g2862 i0 99.644 51.6476868327402 281 1 100 0 1 281 2864 2584 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14513 514 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
19603468 19603468 PRJNA495917_S_NODE_4676_length_231_cov_7.744898_g4482_i0 PRJNA495917 4676 231 7.744898 17.89071438 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 427 2.9399999999999998e-115   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g4482 i0 100 68.030303030303 231 0 100 0 1 231 1527 1757 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 15715 427 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
20234261 20234261 PRJNA495917_S_NODE_13156_length_160_cov_6.032000_g12962_i0 PRJNA495917 13156 160 6.032 9.6512 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 296 5.55e-76   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g12962 i0 100 39.65 160 0 100 0 1 160 1926 1767 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 6344 296 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
20879409 20879409 PRJNA495917_S_NODE_677_length_560_cov_6.662857_g504_i0 PRJNA495917 677 560 6.662857 37.3119992 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 968 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g504 i0 97.857 23.1303571428571 560 12 100 0 1 560 3622 4181 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12953 968 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;