RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA495391", tax_phylum = "Synergistota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA495391 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19602003 19602003 PRJNA495391_S_NODE_25876_length_237_cov_1.876238_g24824_i0 PRJNA495391 25876 237 1.876238 4.44668406 Pyramidobacter sp. YE332 3068894 Bacteria Bacteria 54.7 0.006   NTclustered gi|2601021520|gb|CP133038.1| 3068894 g24824 i0 100 0.122362869198312 29 0 12 0 162 190 55520 55492 Pyramidobacter sp. YE332 chromosome, complete genome blastn 29 54.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp. YE332
29792516 29792516 PRJNA495391_S_NODE_69691_length_151_cov_2.025862_g68639_i0 PRJNA495391 69691 151 2.025862 3.05905162 Synergistaceae bacterium 2053624 Bacteria Bacteria 60.8 3.99e-10   NR MEG1502580.1 2053624 g68639 i0 54.2 0.95364238410596 48 19 91.4 2 149 12 2 48 MEG1502580.1 hypothetical protein [Synergistaceae bacterium] diamond 144 60.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;