RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA495391", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA495391 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20233940 20233940 PRJNA495391_S_NODE_53176_length_170_cov_1.696296_g52124_i0 PRJNA495391 53176 170 1.696296 2.8837032 Iflavirus 232799 Viruses Viruses 315 1.64e-81   NTclustered gi|2889516159|gb|PP437925.1| 198112 g52124 i0 100 99.9823529411765 170 0 100 0 1 170 8420 8589 Deformed wing virus isolate HR-HrvatskaKostajnica50_2017_P_G1 genotype DWV-B, complete genome blastn 16997 315 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Iflavirus aladeformis
22152744 22152744 PRJNA495391_S_NODE_29058_length_224_cov_2.407407_g28006_i0 PRJNA495391 29058 224 2.407407 5.39259168 Iflavirus aladeformis 3047792 Viruses Viruses 403 4.7699999999999995e-108   NTclustered gi|2594802893|gb|OR497389.1| 2498590 g28006 i0 99.107 99.9910714285714 224 2 100 0 1 224 8972 9195 Deformed wing virus B isolate 12-2-C_B DWV polyprotein gene, complete cds blastn 22398 403 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Iflavirus aladeformis
28340258 28340258 PRJNA495391_S_NODE_21886_length_256_cov_3.909502_g20834_i0 PRJNA495391 21886 256 3.909502 10.00832512 Plasmopara viticola lesion associated Partitivirus 9 2692007 Viruses Viruses 139 1.82e-36   NR QHD64805.1 2692007 g20834 i0 74.1 1.9921875 85 22 99.6 0 256 2 156 240 QHD64805.1 coat protein [Plasmopara viticola lesion associated Partitivirus 9] diamond 510 139 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae   Plasmopara viticola lesion associated Partitivirus 9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;