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contig_metadata

27 rows where bioproject = "PRJNA495391" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 27 ✖

tax_clade 1

bioproject 1

  • PRJNA495391 · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
476965 476965 PRJNA495391_S_NODE_56861_length_165_cov_1.530769_g55809_i0 PRJNA495391 56861 165 1.530769 2.52576885 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 174 2.82e-39   NTclustered gi|301098172|ref|XM_002898134.1| 403677 g55809 i0 100 0.56969696969697 94 0 57 0 72 165 14271 14178 Phytophthora infestans T30-4 dynein heavy chain, outer arm (PITG_15967), partial mRNA blastn 94 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
1751167 1751167 PRJNA495391_S_NODE_31042_length_218_cov_1.327869_g29990_i0 PRJNA495391 31042 218 1.327869 2.89475442 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 392 1e-104   NTclustered gi|325195136|emb|FR825930.1| 890382 g29990 i0 99.083 16.4128440366972 218 2 100 0 1 218 228 11 Albugo laibachii Nc14, genomic contig CONTIG_2990_NC14_v4_499_54 blastn 3578 392 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4935572 4935572 PRJNA495391_S_NODE_41204_length_191_cov_1.961538_g40152_i0 PRJNA495391 41204 191 1.961538 3.74653758 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 148 2.04e-31   NTclustered gi|325180604|emb|FR824053.1| 890382 g40152 i0 88.525 1.27748691099476 122 14 64 0 1 122 118982 118861 Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 blastn 244 148 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
5579768 5579768 PRJNA495391_S_NODE_30125_length_221_cov_1.478495_g29073_i0 PRJNA495391 30125 221 1.478495 3.26747395 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 73.9 8.54e-14   NR KAL0585048.1 65357 g29073 i0 66.7 3.50226244343891 51 17 69.2 0 155 3 29 79 KAL0585048.1 hypothetical protein ABG067_005185 [Albugo candida] diamond 774 73.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
7485150 7485150 PRJNA495391_S_NODE_18706_length_277_cov_2.061983_g17654_i0 PRJNA495391 18706 277 2.061983 5.71169291 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 237 6.560000000000001e-58   NTclustered gi|325186025|emb|FR824142.1| 890382 g17654 i0 82.31 4 277 46 99 3 1 276 75792 75518 Albugo laibachii Nc14, genomic contig CONTIG_97_NC14_v4_80307_117 blastn 1108 237 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11310228 11310228 PRJNA495391_S_NODE_18189_length_281_cov_1.764228_g17137_i0 PRJNA495391 18189 281 1.764228 4.95748068 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 292 1.4e-74   NTclustered gi|325180604|emb|FR824053.1| 890382 g17137 i0 86.245 2.12099644128114 269 37 96 0 1 269 118410 118678 Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 blastn 596 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14505912 14505912 PRJNA495391_S_NODE_6852_length_468_cov_2.660508_g5805_i0 PRJNA495391 6852 468 2.660508 12.45117744 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 190 1.6e-58   NR KAL0583418.1 65357 g5805 i0 100 1.08974358974359 85 0 54.5 0 328 74 100 184 KAL0583418.1 hypothetical protein ABG067_006653 [Albugo candida] diamond 510 190 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
15135422 15135422 PRJNA495391_S_NODE_38412_length_197_cov_2.438272_g37360_i0 PRJNA495391 38412 197 2.438272 4.80339584 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 265 2.0099999999999997e-66   NTclustered gi|325180604|emb|FR824053.1| 890382 g37360 i0 90.863 2.24873096446701 197 18 100 0 1 197 117987 117791 Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 blastn 443 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15778622 15778622 PRJNA495391_S_NODE_22373_length_254_cov_1.771689_g21321_i0 PRJNA495391 22373 254 1.771689 4.50009006 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 233 7.669999999999999e-57   NTclustered gi|325194646|emb|FR825458.1| 890382 g21321 i0 86.73 2.29527559055118 211 26 83 2 1 210 262 53 Albugo laibachii Nc14, genomic contig CONTIG_2303_NC14_v4_894_25 blastn 583 233 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
17054285 17054285 PRJNA495391_S_NODE_59114_length_162_cov_1.921260_g58062_i0 PRJNA495391 59114 162 1.92126 3.1124412 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 250 4.45e-62   NTclustered gi|325195057|emb|FR825852.1| 890382 g58062 i0 94.479 83.4814814814815 163 8 100 1 1 162 275 113 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 13524 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18327564 18327564 PRJNA495391_S_NODE_19195_length_273_cov_10.508403_g18143_i0 PRJNA495391 19195 273 10.508403 28.68794019 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 503 5.76e-138   NTclustered gi|380865879|gb|JQ277732.1| 65357 g18143 i0 100 96.9267399267399 272 0 99 0 2 273 1315 1044 Albugo candida strain TT1958 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26461 503 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
27772148 27772148 PRJNA495391_S_NODE_8504_length_415_cov_2.471053_g7453_i0 PRJNA495391 8504 415 2.471053 10.25486995 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 92.4 4.15e-21   NR CCI44471.1 65357 g7453 i0 100 0.325301204819277 45 0 32.5 0 247 113 1 45 CCI44471.1 unnamed protein product [Albugo candida] diamond 135 92.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
28056004 28056004 PRJNA495391_S_NODE_48345_length_177_cov_2.950704_g47293_i0 PRJNA495391 48345 177 2.950704 5.22274608 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 97.1 6.779999999999999e-23   NR CCA28224.1 890382 g47293 i0 75.9 0.983050847457627 58 14 98.3 0 175 2 54 111 CCA28224.1 predicted protein putative [Albugo laibachii Nc14] diamond 174 97.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
28308780 28308780 PRJNA495391_S_NODE_71066_length_150_cov_1.460870_g70014_i0 PRJNA495391 71066 150 1.46087 2.191305 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 103 2.8099999999999998e-24   NR CCI44402.1 65357 g70014 i0 100 0.98 49 0 98 0 148 2 181 229 CCI44402.1 unnamed protein product [Albugo candida] diamond 147 103 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
28371763 28371763 PRJNA495391_S_NODE_47886_length_178_cov_2.083916_g46834_i0 PRJNA495391 47886 178 2.083916 3.70937048 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 113 2.88e-28   NR CCI43533.1 65357 g46834 i0 93.2 0.99438202247191 59 4 99.4 0 1 177 64 122 CCI43533.1 unnamed protein product [Albugo candida] diamond 177 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
28466716 28466716 PRJNA495391_S_NODE_44726_length_184_cov_1.718121_g43674_i0 PRJNA495391 44726 184 1.718121 3.16134264 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 52 9.27e-6   NR XP_008864078.1 157072 g43674 i0 45.6 2.21739130434783 68 29 97.8 2 4 183 282 349 XP_008864078.1 hypothetical protein H310_02371 [Aphanomyces invadans] diamond 408 52 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
28750708 28750708 PRJNA495391_S_NODE_34567_length_207_cov_2.197674_g33515_i0 PRJNA495391 34567 207 2.197674 4.54918518 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 50.4 8.28e-6   NR CCI10229.1 65357 g33515 i0 87.9 0.478260869565217 33 1 43.5 1 101 12 1 33 CCI10229.1 unnamed protein product [Albugo candida] diamond 99 50.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
28940368 28940368 PRJNA495391_S_NODE_44668_length_184_cov_1.872483_g43616_i0 PRJNA495391 44668 184 1.872483 3.44536872 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 127 6.16e-33   NR CCI48426.1 65357 g43616 i0 100 0.96195652173913 59 0 96.2 0 179 3 197 255 CCI48426.1 unnamed protein product [Albugo candida] diamond 177 127 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
29445172 29445172 PRJNA495391_S_NODE_8890_length_406_cov_1.501348_g7839_i0 PRJNA495391 8890 406 1.501348 6.09547288 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 274 3.0099999999999997e-88   NR CCI48426.1 65357 g7839 i0 99.3 0.997536945812808 135 1 99.8 0 405 1 321 455 CCI48426.1 unnamed protein product [Albugo candida] diamond 405 274 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
29539957 29539957 PRJNA495391_S_NODE_37790_length_199_cov_1.445122_g36738_i0 PRJNA495391 37790 199 1.445122 2.87579278 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 133 1.9199999999999999e-34   NR CCI47610.1 65357 g36738 i0 95.3 0.964824120603015 64 3 96.5 0 7 198 489 552 CCI47610.1 unnamed protein product [Albugo candida] diamond 192 133 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
30945737 30945737 PRJNA495391_S_NODE_25594_length_238_cov_2.315271_g24542_i0 PRJNA495391 25594 238 2.315271 5.51034498 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 56.6 4.53e-7   NR XP_067816698.1 4779 g24542 i0 96.4 3.17647058823529 28 1 35.3 0 237 154 649 676 XP_067816698.1 hypothetical protein CCR75_004843 [Bremia lactucae] diamond 756 56.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
31213959 31213959 PRJNA495391_S_NODE_31335_length_217_cov_1.527473_g30283_i0 PRJNA495391 31335 217 1.527473 3.31461641 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 84 8.18e-17   NR KAL0586956.1 65357 g30283 i0 93 1.1889400921659 43 3 59.4 0 1 129 800 842 KAL0586956.1 hypothetical protein ABG067_003296 [Albugo candida] diamond 258 84 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32005251 32005251 PRJNA495391_S_NODE_20838_length_263_cov_2.328947_g19786_i0 PRJNA495391 20838 263 2.328947 6.12513061 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 60.8 1.92e-8   NR CCA18615.1 890382 g19786 i0 80.6 0.4106463878327 36 7 41.1 0 156 263 60 95 CCA18615.1 DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] diamond 108 60.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
32020800 32020800 PRJNA495391_S_NODE_44738_length_184_cov_1.671141_g43686_i0 PRJNA495391 44738 184 1.671141 3.07489944 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 48.1 2.16e-4   NR CCI45975.1 65357 g43686 i0 76.7 0.978260869565217 30 7 48.9 0 147 58 525 554 CCI45975.1 unnamed protein product [Albugo candida] diamond 180 48.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32305853 32305853 PRJNA495391_S_NODE_59259_length_162_cov_1.669291_g58207_i0 PRJNA495391 59259 162 1.669291 2.70425142 root 1 Root_unresolved Root_unresolved 111 5.870000000000001e-29   NR KAL0582261.1 65357 g58207 i0 98.1 2.94444444444444 53 1 98.1 0 2 160 116 168 KAL0582261.1 hypothetical protein ABG067_007890, partial [Albugo candida] diamond 477 111 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32337417 32337417 PRJNA495391_S_NODE_24479_length_243_cov_2.956731_g23427_i0 PRJNA495391 24479 243 2.956731 7.18485633 root 1 Root_unresolved Root_unresolved 157 2.76e-46   NR KAL0582261.1 65357 g23427 i0 100 2.96296296296296 80 0 98.8 0 242 3 33 112 KAL0582261.1 hypothetical protein ABG067_007890, partial [Albugo candida] diamond 720 157 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32606183 32606183 PRJNA495391_S_NODE_28800_length_225_cov_2.247368_g27748_i0 PRJNA495391 28800 225 2.247368 5.056578 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 160 1.15e-43   NR CCI10176.1 65357 g27748 i0 100 1 75 0 100 0 1 225 796 870 CCI10176.1 unnamed protein product [Albugo candida] diamond 225 160 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;