RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA495391", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 14 ✖

tax_phylum 1

  • Myxococcota · 14 ✖

tax_kingdom 1

bioproject 1

  • PRJNA495391 · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13229935 13229935 PRJNA495391_S_NODE_26771_length_233_cov_2.005051_g25719_i0 PRJNA495391 26771 233 2.005051 4.67176883 Chondromyces crocatus 52 Bacteria Bacteria 60.2 1.25e-4   NTclustered gi|908353314|gb|CP012159.1| 52 g25719 i0 100 1.14163090128755 32 0 14 0 101 132 8256473 8256442 Chondromyces crocatus strain Cm c5, complete genome blastn 266 60.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
15778308 15778308 PRJNA495391_S_NODE_10673_length_368_cov_2.378378_g9621_i0 PRJNA495391 10673 368 2.378378 8.75243104 Corallococcus exercitus 2316736 Bacteria Bacteria 54.7 0.01   NTclustered gi|2809270164|gb|CP102577.1| 2316736 g9621 i0 86.275 0.138586956521739 51 5 14 2 107 156 4050343 4050294 Corallococcus exercitus strain SDU142 chromosome, complete genome blastn 51 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exercitus
19602084 19602084 PRJNA495391_S_NODE_28856_length_225_cov_1.863158_g27804_i0 PRJNA495391 28856 225 1.863158 4.1921055 Polyangium aurulentum 2567896 Bacteria Bacteria 62.1 3.32e-5   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g27804 i0 97.222 0.16 36 1 16 0 175 210 9998487 9998522 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 36 62.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
26697029 26697029 PRJNA495391_S_NODE_65661_length_155_cov_1.766667_g64609_i0 PRJNA495391 65661 155 1.766667 2.73833385 Kofleriaceae bacterium 2212474 Bacteria Bacteria 41.6 0.0163   NR HEX4451411.1 2212474 g64609 i0 45.1 1.9741935483871 51 28 98.7 0 155 3 29 79 HEX4451411.1 hypothetical protein [Kofleriaceae bacterium] diamond 306 41.6 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27298253 27298253 PRJNA495391_S_NODE_22443_length_253_cov_3.211009_g21391_i0 PRJNA495391 22443 253 3.211009 8.12385277 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 50.8 5.21e-6   NR MCC7381001.1 2026735 g21391 i0 44.8 1.71936758893281 67 37 79.4 0 50 250 15 81 MCC7381001.1 acyl carrier protein [Deltaproteobacteria bacterium] diamond 435 50.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28024602 28024602 PRJNA495391_S_NODE_1825_length_1063_cov_2.709144_g1007_i0 PRJNA495391 1825 1063 2.709144 28.79820072 Vulgatibacter sp. 1971226 Bacteria Bacteria 77 1.39e-11   NR HEY0840340.1 1971226 g1007 i0 37.8 0.358419567262465 127 70 34.1 4 124 486 10 133 HEY0840340.1 GTPase [Vulgatibacter sp.] diamond 381 77 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Vulgatibacteraceae Vulgatibacter Vulgatibacter sp.
28119153 28119153 PRJNA495391_S_NODE_27405_length_230_cov_3.097436_g26353_i0 PRJNA495391 27405 230 3.097436 7.1241028 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.00484   NR MBW1660160.1 2026735 g26353 i0 50 2.04782608695652 46 20 60 1 155 18 37 79 MBW1660160.1 lectin [Deltaproteobacteria bacterium] diamond 471 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28119157 28119157 PRJNA495391_S_NODE_30605_length_219_cov_1.994565_g29553_i0 PRJNA495391 30605 219 1.994565 4.36809735 Kofleriaceae bacterium 2212474 Bacteria Bacteria 42 0.0491   NR HTL37125.1 2212474 g29553 i0 38.6 0.958904109589041 70 33 82.2 4 33 212 91 160 HTL37125.1 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein [Kofleriaceae bacterium] diamond 210 42 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
29476615 29476615 PRJNA495391_S_NODE_51610_length_172_cov_2.058394_g50558_i0 PRJNA495391 51610 172 2.058394 3.54043768 Polyangiaceae bacterium 2268199 Bacteria Bacteria 52.4 5.75e-6   NR HEY1695748.1 2268199 g50558 i0 52 1.86627906976744 50 22 83.7 1 150 7 541 590 HEY1695748.1 asparagine synthase (glutamine-hydrolyzing) [Polyangiaceae bacterium] diamond 321 52.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30171666 30171666 PRJNA495391_S_NODE_14672_length_312_cov_3.083032_g13620_i0 PRJNA495391 14672 312 3.083032 9.61905984 Myxococcus sp. AB 1929279 Bacteria Bacteria 117 6.37e-32   NR WP_228557495.1 2562794 g13620 i0 72.4 0.730769230769231 76 21 73.1 0 311 84 2 77 WP_228557495.1 hypothetical protein, partial [Myxococcus sp. AB025B] diamond 228 117 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp. AB025B
30456481 30456481 PRJNA495391_S_NODE_55213_length_167_cov_1.878788_g54161_i0 PRJNA495391 55213 167 1.878788 3.13757596 Kofleriaceae bacterium 2212474 Bacteria Bacteria 44.3 0.00385   NR HEU0034684.1 2212474 g54161 i0 48.1 1.95808383233533 54 27 97 1 2 163 620 672 HEU0034684.1 AMP-binding protein [Kofleriaceae bacterium] diamond 327 44.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31150778 31150778 PRJNA495391_S_NODE_59875_length_161_cov_2.134921_g58823_i0 PRJNA495391 59875 161 2.134921 3.43722281 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 41.2 0.0434   NR MBW2730821.1 2026735 g58823 i0 45 0.745341614906832 40 22 74.5 0 124 5 23 62 MBW2730821.1 AMP-binding protein [Deltaproteobacteria bacterium] diamond 120 41.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31973543 31973543 PRJNA495391_S_NODE_24478_length_243_cov_2.971154_g23426_i0 PRJNA495391 24478 243 2.971154 7.21990422 Myxococcales bacterium 2026763 Bacteria Bacteria 63.2 1.76e-9   NR MCA9628966.1 2026763 g23426 i0 52.8 1.50617283950617 53 25 65.4 0 83 241 9 61 MCA9628966.1 alcohol dehydrogenase catalytic domain-containing protein [Myxococcales bacterium] diamond 366 63.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32574964 32574964 PRJNA495391_S_NODE_37339_length_200_cov_1.684848_g36287_i0 PRJNA495391 37339 200 1.684848 3.369696 Pyxidicoccus sp. 3LG 3383247 Bacteria Bacteria 75.5 2.76e-14   NR MFP2925733.1 3383247 g36287 i0 53.8 0.975 65 29 96 1 2 193 88 152 MFP2925733.1 ADP-ribosylglycohydrolase family protein [Pyxidicoccus sp. 3LG] diamond 195 75.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus sp. 3LG

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;