RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA495391", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 19 ✖

tax_phylum 1

  • Kitrinoviricota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA495391 · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
477289 477289 PRJNA495391_S_NODE_70681_length_150_cov_2.165217_g69629_i0 PRJNA495391 70681 150 2.165217 3.2478255 Potexvirus trifolii 3433859 Viruses Viruses 267 4.009999999999999e-67   NTclustered gi|564614830|gb|KF421939.1| 12188 g69629 i0 98.667 33.84 150 2 100 0 1 150 5248 5397 White clover mosaic virus isolate 05TGP00172 putative RNA replicase, putative triple gene block protein 1, putative triple gene block protein 2, putative triple gene block protein 3, and putative coat protein genes, complete cds blastn 5076 267 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
1750855 1750855 PRJNA495391_S_NODE_19642_length_271_cov_1.644068_g18590_i0 PRJNA495391 19642 271 1.644068 4.45542428 Pestivirus bovis 3052619 Viruses Viruses 451 2.0999999999999997e-122   NTclustered gi|380719829|gb|JQ071528.1| 11099 g18590 i0 96.679 99.3579335793358 271 9 100 0 1 271 16 286 Bovine viral diarrhea virus 1 strain GS2 polyprotein gene, partial cds blastn 26926 451 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
1750900 1750900 PRJNA495391_S_NODE_2142_length_949_cov_11.221007_g1285_i0 PRJNA495391 2142 949 11.221007 106.48735643 Pestivirus brazilense 3052620 Viruses Viruses 1642 0   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g1285 i0 97.803 66.4257112750263 956 13 99 4 2 949 1017 62 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 63038 1642 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
1751225 1751225 PRJNA495391_S_NODE_33102_length_211_cov_3.125000_g32050_i0 PRJNA495391 33102 211 3.125 6.59375 Erysiphe necator associated deltaflexivirus 4 2743097 Viruses Viruses 390 3.459999999999999e-104   NTclustered gi|2288523299|gb|ON811606.1| 2743097 g32050 i0 100 1.51184834123223 211 0 100 0 1 211 6837 7047 MAG: Erysiphe necator associated deltaflexivirus 4 isolate TIGMIC_2, complete genome blastn 319 390 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Deltaflexiviridae Deltaflexivirus Erysiphe necator associated deltaflexivirus 4
1751329 1751329 PRJNA495391_S_NODE_36982_length_201_cov_1.542169_g35930_i0 PRJNA495391 36982 201 1.542169 3.09975969 Pestivirus bovis 3052619 Viruses Viruses 333 5.569999999999999e-87   NTclustered gi|2440740783|gb|ON411191.1| 11099 g35930 i0 96.517 22.9800995024876 201 7 100 0 1 201 9588 9388 Bovine viral diarrhea virus 1 isolate 21NM-44 polyprotein gene, complete cds blastn 4619 333 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
8129835 8129835 PRJNA495391_S_NODE_51747_length_172_cov_1.737226_g50695_i0 PRJNA495391 51747 172 1.737226 2.98802872 Pestivirus bovis 3052619 Viruses Viruses 278 2.19e-70   NTclustered gi|586616531|gb|KF896608.1| 11099 g50695 i0 95.906 95.8662790697674 171 7 99 0 2 172 6754 6924 Bovine viral diarrhea virus 1 isolate Bega-like polyprotein gene, complete cds blastn 16489 278 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
10679312 10679312 PRJNA495391_S_NODE_11089_length_360_cov_5.092308_g10037_i0 PRJNA495391 11089 360 5.092308 18.3323088 Potexvirus trifolii 3433859 Viruses Viruses 612 1.2499999999999997e-170   NTclustered gi|2054359742|gb|MW248353.1| 12188 g10037 i0 97.486 30.1361111111111 358 9 99 0 3 360 5843 5486 White clover mosaic virus isolate DSMZ PV-0310 replication-associated protein (ORF1), triple gene block 1 protein (ORF2), triple gene block 2 protein (ORF3), triple gene block 3 protein (ORF4), and capsid protein (ORF5) genes, complete cds blastn 10849 612 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
10679912 10679912 PRJNA495391_S_NODE_32829_length_212_cov_2.435028_g31777_i0 PRJNA495391 32829 212 2.435028 5.16225936 Pestivirus bovis 3052619 Viruses Viruses 331 2.1400000000000006e-86   NTclustered gi|2448011657|gb|ON624287.1| 11099 g31777 i0 94.811 97.3349056603774 212 11 100 0 1 212 7146 7357 Bovine viral diarrhea virus 1 isolate 21SD-16 polyprotein gene, complete cds blastn 20635 331 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
15778400 15778400 PRJNA495391_S_NODE_14333_length_316_cov_2.362989_g13281_i0 PRJNA495391 14333 316 2.362989 7.46704524 Pestivirus bovis 3052619 Viruses Viruses 464 3.2099999999999996e-126   NTclustered gi|2449445617|gb|OQ348280.1| 11099 g13281 i0 92.722 61.1170886075949 316 23 100 0 1 316 8405 8720 MAG: Bovine viral diarrhea virus 1 isolate ASRA5 polyprotein gene, partial cds blastn 19313 464 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
15779824 15779824 PRJNA495391_S_NODE_68173_length_153_cov_1.144068_g67121_i0 PRJNA495391 68173 153 1.144068 1.75042404 Pestivirus bovis 3052619 Viruses Viruses 241 2.49e-59   NTclustered gi|1831805881|emb|LR760748.1| 11099 g67121 i0 95.364 34.8496732026144 151 7 99 0 3 153 1945 1795 Bovine viral diarrhea virus 1 complete genome gene for viral polyprotein blastn 5332 241 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18327845 18327845 PRJNA495391_S_NODE_29595_length_222_cov_2.711230_g28543_i0 PRJNA495391 29595 222 2.71123 6.0189306 Pestivirus bovis 3052619 Viruses Viruses 313 8.18e-81   NTclustered gi|2905035930|gb|PQ782224.1| 11099 g28543 i0 91.964 28.3513513513514 224 16 100 2 1 222 10534 10311 Bovine viral diarrhea virus 1 isolate BVDV-1c-IM-2018, complete genome blastn 6294 313 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18328280 18328280 PRJNA495391_S_NODE_46075_length_181_cov_3.095890_g45023_i0 PRJNA495391 46075 181 3.09589 5.6035609 Pestivirus bovis 3052619 Viruses Viruses 285 1.39e-72   NTclustered gi|2429573847|gb|ON098979.1| 11099 g45023 i0 95.028 82.4585635359116 181 9 100 0 1 181 8055 8235 Bovine viral diarrhea virus 1 isolate 21NX-300, complete genome blastn 14925 285 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18958738 18958738 PRJNA495391_S_NODE_25755_length_237_cov_3.069307_g24703_i0 PRJNA495391 25755 237 3.069307 7.27425759 root 1 Root_unresolved Root_unresolved 383 6.64e-102   NTclustered gi|1129880669|gb|KX170702.1| 11099 g24703 i0 95.781 99.4725738396624 237 10 100 0 1 237 850 614 Bovine viral diarrhea virus 1 isolate V008 NS5B gene, partial cds blastn 23575 383 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20877575 20877575 PRJNA495391_S_NODE_1477_length_1260_cov_4.899592_g713_i0 PRJNA495391 1477 1260 4.899592 61.7348592 Pestivirus bovis 3052619 Viruses Viruses 1733 0   NTclustered gi|2563906172|gb|ON732849.1| 11099 g713 i0 91.515 80.7150793650794 1261 104 100 3 1 1260 10421 9163 Bovine viral diarrhea virus 1 isolate SDJN01, complete genome blastn 101701 1733 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20879136 20879136 PRJNA495391_S_NODE_8457_length_416_cov_2.556430_g7406_i0 PRJNA495391 8457 416 2.55643 10.6347488 Pestivirus bovis 3052619 Viruses Viruses 625 1.8799999999999998e-174   NTclustered gi|2563906172|gb|ON732849.1| 11099 g7406 i0 93.75 44.1129807692308 416 26 100 0 1 416 8815 8400 Bovine viral diarrhea virus 1 isolate SDJN01, complete genome blastn 18351 625 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
22153846 22153846 PRJNA495391_S_NODE_71138_length_150_cov_1.382609_g70086_i0 PRJNA495391 71138 150 1.382609 2.0739135 Pestivirus bovis 3052619 Viruses Viruses 265 1.44e-66   NTclustered gi|2905035930|gb|PQ782224.1| 11099 g70086 i0 98.658 23.98 149 2 99 0 1 149 8664 8812 Bovine viral diarrhea virus 1 isolate BVDV-1c-IM-2018, complete genome blastn 3597 265 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
23428475 23428475 PRJNA495391_S_NODE_25559_length_238_cov_2.650246_g24507_i0 PRJNA495391 25559 238 2.650246 6.30758548 Pestivirus bovis 3052619 Viruses Viruses 348 2.4300000000000005e-91   NTclustered gi|1831805881|emb|LR760748.1| 11099 g24507 i0 92.917 51.6554621848739 240 15 100 1 1 238 7982 7743 Bovine viral diarrhea virus 1 complete genome gene for viral polyprotein blastn 12294 348 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
23429602 23429602 PRJNA495391_S_NODE_68039_length_153_cov_1.338983_g66987_i0 PRJNA495391 68039 153 1.338983 2.04864399 Pestivirus brazilense 3052620 Viruses Viruses 272 8.84e-69   NTclustered gi|2813517655|gb|PQ362005.1| 381707 g66987 i0 98.693 29.9738562091503 153 2 100 0 1 153 9630 9782 Bovine viral diarrhea virus 3 isolate HN2247, partial genome blastn 4586 272 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
27614230 27614230 PRJNA495391_S_NODE_50364_length_174_cov_2.007194_g49312_i0 PRJNA495391 50364 174 2.007194 3.49251756 Erysiphe necator associated flexivirus 3 2743100 Viruses Viruses 123 7.019999999999999e-31   NR QKN22675.1 2743100 g49312 i0 96.5 0.982758620689655 57 2 98.3 0 3 173 1751 1807 QKN22675.1 RNA-dependent RNA polymerase [Erysiphe necator associated flexivirus 3] diamond 171 123 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Erysiphe necator associated flexivirus 3

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;