RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA495391", tax_kingdom = "Pseudomonadati" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA495391 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6210562 6210562 PRJNA495391_S_NODE_23485_length_248_cov_2.140845_g22433_i0 PRJNA495391 23485 248 2.140845 5.3092956 Bacteria 2 Bacteria Bacteria 337 5.53e-88   NTclustered gi|226525339|gb|FJ872375.1| 156588 g22433 i0 91.77 353.866935483871 243 18 98 2 1 242 27243 27484 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 87759 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
8130184 8130184 PRJNA495391_S_NODE_65107_length_156_cov_1.165289_g64055_i0 PRJNA495391 65107 156 1.165289 1.81785084 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 267 4.2199999999999997e-67   NTclustered gi|2874253952|emb|OY970277.1| 412056 g64055 i0 97.436 275.673076923077 156 4 100 0 1 156 2748517 2748362 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 43005 267 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
11955462 11955462 PRJNA495391_S_NODE_50550_length_174_cov_1.474820_g49498_i0 PRJNA495391 50550 174 1.47482 2.5661868 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 263 6.21e-66   NTclustered gi|226525339|gb|FJ872375.1| 156588 g49498 i0 94.253 88.4770114942529 174 6 99 4 3 174 27830 27659 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 15395 263 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
32858052 32858052 PRJNA495391_S_NODE_26120_length_236_cov_1.706468_g25068_i0 PRJNA495391 26120 236 1.706468 4.02726448 Chthoniobacter sp. 2510640 Bacteria Bacteria 142 2.629999999999999e-38   NR MDR3405335.1 2510640 g25068 i0 84.6 0.991525423728814 78 12 99.2 0 2 235 309 386 MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] diamond 234 142 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;