RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA495391", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA495391 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13231068 13231068 PRJNA495391_S_NODE_69071_length_152_cov_1.341880_g68019_i0 PRJNA495391 69071 152 1.34188 2.0396576 Leptospira mgodei 3235172 Bacteria Bacteria 281 1.46e-71   NTclustered gi|2777195838|gb|CP162139.1| 3235172 g68019 i0 100 1 152 0 100 0 1 152 1900408 1900257 Leptospira mgodei strain WS4.C2 chromosome 1, complete sequence blastn 152 281 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira mgodei
14505006 14505006 PRJNA495391_S_NODE_33672_length_210_cov_1.520000_g32620_i0 PRJNA495391 33672 210 1.52 3.192 Pseudomonadati 3379134 Bacteria Bacteria 110 1.59e-29   NR WP_230457535.1 174 g32620 i0 74.6 12.2 71 16 98.6 1 3 209 15 85 WP_230457535.1 hypothetical protein [Leptospira borgpetersenii] diamond 2562 110 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii
30045233 30045233 PRJNA495391_S_NODE_18471_length_279_cov_1.581967_g17419_i0 PRJNA495391 18471 279 1.581967 4.41368793 Rectinemataceae bacterium 3064674 Bacteria Bacteria 43.1 0.0408   NR HWR11605.1 3064674 g17419 i0 36.6 0.881720430107527 82 39 78.5 2 54 272 367 444 HWR11605.1 formylglycine-generating enzyme family protein [Rectinemataceae bacterium] diamond 246 43.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Rectinemataceae   Rectinemataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;