RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA495391", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 20 ✖

tax_clade 1

  • Sar · 20 ✖

bioproject 1

  • PRJNA495391 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
476749 476749 PRJNA495391_S_NODE_48261_length_178_cov_1.111888_g47209_i0 PRJNA495391 48261 178 1.111888 1.97916064 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 219 1.4e-52   NTclustered gi|301014695|gb|GQ377692.1| 151077 g47209 i0 88.764 87.7359550561798 178 20 100 0 1 178 227 404 Chilodonella uncinata ribosomal protein S23a-like (rps23a) mRNA, complete sequence blastn 15617 219 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
6210587 6210587 PRJNA495391_S_NODE_24865_length_241_cov_8.223301_g23813_i0 PRJNA495391 24865 241 8.223301 19.81815541 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 435 1.84e-117   NTclustered gi|10782|emb|X54004.1| 5908 g23813 i0 99.17 80.0331950207469 241 2 100 0 1 241 3189 2949 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 19288 435 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
8128851 8128851 PRJNA495391_S_NODE_15907_length_300_cov_2.460377_g14855_i0 PRJNA495391 15907 300 2.460377 7.381131 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 123 7.389999999999999e-32   NR CAD8069000.1 65129 g14855 i0 66 3.99 100 32 100 1 300 1 48 145 CAD8069000.1 unnamed protein product [Paramecium sonneborni] diamond 1197 124 0.991935483870968 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sonneborni
10679293 10679293 PRJNA495391_S_NODE_10289_length_375_cov_5.641176_g9237_i0 PRJNA495391 10289 375 5.641176 21.15441 Epistylis sp. 6 2979169 SAR_Eukaryotes SAR_Eukaryotes 676 0   NTclustered gi|2304601482|gb|OP458303.1| 2979169 g9237 i0 99.2 98.8933333333333 375 3 100 0 1 375 410 36 Epistylis sp. 6 large subunit ribosomal RNA gene, partial sequence blastn 37085 676 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Epistylidae Epistylis Epistylis sp. 6
15779168 15779168 PRJNA495391_S_NODE_42273_length_189_cov_1.448052_g41221_i0 PRJNA495391 42273 189 1.448052 2.73681828 Sterkiella nova 200597 SAR_Eukaryotes SAR_Eukaryotes 110 9.49e-20   NTclustered gi|405113127|gb|JX441317.1| 200597 g41221 i0 81.159 4.33333333333333 138 24 72 2 15 151 368 504 Sterkiella nova macronuclear nanochromosome, complete sequence blastn 819 110 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella nova
19601804 19601804 PRJNA495391_S_NODE_18676_length_277_cov_2.586777_g17624_i0 PRJNA495391 18676 277 2.586777 7.16537229 Philasterida sp. 2006707 SAR_Eukaryotes SAR_Eukaryotes 172 1.87e-38   NTclustered gi|2354193480|gb|OP896969.1| 2006707 g17624 i0 79.273 55.4729241877256 275 36 97 17 3 270 1239 979 Philasterida sp. strain tDaCF9_52 large subunit ribosomal RNA gene, partial sequence blastn 15366 172 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida     Philasterida sp.
27108357 27108357 PRJNA495391_S_NODE_49602_length_175_cov_2.585714_g48550_i0 PRJNA495391 49602 175 2.585714 4.5249995 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0113   NR TNV87635.1 5974 g48550 i0 47.5 0.685714285714286 40 21 68.6 0 17 136 919 958 TNV87635.1 hypothetical protein FGO68_gene9300 [Halteria grandinella] diamond 120 43.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
27234988 27234988 PRJNA495391_S_NODE_22203_length_255_cov_1.609091_g21151_i0 PRJNA495391 22203 255 1.609091 4.10318205 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 56.6 5.7e-7   NR KRX07656.1 266149 g21151 i0 39.7 2.87058823529412 63 36 71.8 1 250 68 2211 2273 KRX07656.1 Ubiquitin-conjugating enzyme/RWD-like protein [Pseudocohnilembus persalinus] diamond 732 56.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
27424853 27424853 PRJNA495391_S_NODE_11723_length_350_cov_1.863492_g10671_i0 PRJNA495391 11723 350 1.863492 6.522222 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 118 3.27e-30   NR XP_001031847.2 312017 g10671 i0 48.3 1.98857142857143 116 42 99.4 2 349 2 138 235 XP_001031847.2 60S ribosomal protein L7 [Tetrahymena thermophila SB210] diamond 696 118 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
27772132 27772132 PRJNA495391_S_NODE_47464_length_179_cov_1.708333_g46412_i0 PRJNA495391 47464 179 1.708333 3.05791607 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 58.2 4.97e-8   NR CAG9319528.1 1481888 g46412 i0 63.9 3.53631284916201 36 13 60.3 0 179 72 262 297 CAG9319528.1 unnamed protein product [Blepharisma stoltei] diamond 633 58.2 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
30092337 30092337 PRJNA495391_S_NODE_19132_length_274_cov_2.150628_g18080_i0 PRJNA495391 19132 274 2.150628 5.89272072 Oligohymenophorea 6020 SAR_Eukaryotes SAR_Eukaryotes 88.2 5.77e-18   NR KRX08632.1 266149 g18080 i0 58.2 1.5 67 28 73.4 0 274 74 60 126 KRX08632.1 P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus] diamond 411 88.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
30692750 30692750 PRJNA495391_S_NODE_17553_length_286_cov_2.047809_g16501_i0 PRJNA495391 17553 286 2.047809 5.85673374 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 82.8 1.31e-18   NR XP_004023838.1 5932 g16501 i0 79.6 1.12237762237762 54 10 55.6 1 2 160 15 68 XP_004023838.1 ribosomal protein, putative [Ichthyophthirius multifiliis] diamond 321 82.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31056747 31056747 PRJNA495391_S_NODE_25055_length_240_cov_4.209756_g24003_i0 PRJNA495391 25055 240 4.209756 10.1034144 Paramecium sonneborni 65129 SAR_Eukaryotes SAR_Eukaryotes 102 1.5e-25   NR CAD8050189.1 65129 g24003 i0 62.5 3.8875 80 29 98.8 1 2 238 61 140 CAD8050189.1 unnamed protein product [Paramecium sonneborni] diamond 933 102 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sonneborni
31245998 31245998 PRJNA495391_S_NODE_28655_length_226_cov_1.445026_g27603_i0 PRJNA495391 28655 226 1.445026 3.26575876 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 66.6 1.14e-10   NR CAD8188981.1 43137 g27603 i0 52.5 0.783185840707965 59 27 78.3 1 2 178 503 560 CAD8188981.1 unnamed protein product [Paramecium octaurelia] diamond 177 66.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
31340936 31340936 PRJNA495391_S_NODE_18216_length_280_cov_4.077551_g17164_i0 PRJNA495391 18216 280 4.077551 11.4171428 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 99.4 1.02e-22   NR CAG9335557.1 1481888 g17164 i0 83.1 0.632142857142857 59 10 63.2 0 103 279 11 69 CAG9335557.1 unnamed protein product [Blepharisma stoltei] diamond 177 99.4 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
31499248 31499248 PRJNA495391_S_NODE_36816_length_201_cov_2.222892_g35764_i0 PRJNA495391 36816 201 2.222892 4.46801292 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 98.2 8.419999999999999e-23   NR KRW99550.1 266149 g35764 i0 65.8 1.08955223880597 73 18 98.5 2 200 3 165 237 KRW99550.1 hypothetical protein PPERSA_02408 [Pseudocohnilembus persalinus] diamond 219 98.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
32163562 32163562 PRJNA495391_S_NODE_26438_length_234_cov_3.105528_g25386_i0 PRJNA495391 26438 234 3.105528 7.26693552 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 61.6 2.48e-9   NR CAG9312301.1 1481888 g25386 i0 50.9 2.1025641025641 55 26 70.5 1 176 12 132 185 CAG9312301.1 unnamed protein product [Blepharisma stoltei] diamond 492 61.6 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
32226853 32226853 PRJNA495391_S_NODE_34118_length_208_cov_3.167630_g33066_i0 PRJNA495391 34118 208 3.16763 6.5886704 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 69.7 1.42e-13   NR OMJ72236.1 5963 g33066 i0 54.4 0.980769230769231 68 31 98.1 0 206 3 13 80 OMJ72236.1 hypothetical protein SteCoe_29375 [Stentor coeruleus] diamond 204 69.7 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
32495522 32495522 PRJNA495391_S_NODE_46439_length_181_cov_1.506849_g45387_i0 PRJNA495391 46439 181 1.506849 2.72739669 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 80.9 5.93e-16   NR XP_001454088.1 5888 g45387 i0 63.8 4.87292817679558 58 21 96.1 0 8 181 506 563 XP_001454088.1 uncharacterized protein GSPATT00020363001 [Paramecium tetraurelia] diamond 882 80.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
32763587 32763587 PRJNA495391_S_NODE_54640_length_168_cov_1.526316_g53588_i0 PRJNA495391 54640 168 1.526316 2.56421088 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 50.8 1.77e-5   NR XP_004035127.1 5932 g53588 i0 38.9 2.96428571428571 54 32 96.4 1 6 167 224 276 XP_004035127.1 hypothetical protein IMG5_105540 [Ichthyophthirius multifiliis] diamond 498 50.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;