RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA495391", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA495391 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29098158 29098158 PRJNA495391_S_NODE_60508_length_161_cov_0.928571_g59456_i0 PRJNA495391 60508 161 0.928571 1.49499931 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42 0.0231   NR HEV7702704.1 2026741 g59456 i0 40 1.02484472049689 55 26 96.9 2 157 2 212 262 HEV7702704.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 165 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30076814 30076814 PRJNA495391_S_NODE_44912_length_184_cov_1.140940_g43860_i0 PRJNA495391 44912 184 1.14094 2.0993296 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 41.6 0.0425   NR HYU91795.1 2448054 g43860 i0 37.3 0.96195652173913 59 37 96.2 0 1 177 80 138 HYU91795.1 tetratricopeptide repeat protein [Gemmatimonadales bacterium] diamond 177 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30298603 30298603 PRJNA495391_S_NODE_27652_length_229_cov_3.046392_g26600_i0 PRJNA495391 27652 229 3.046392 6.97623768 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 92.4 9.44e-20   NR MFI5257301.1 2448054 g26600 i0 56 2.94759825327511 75 33 98.3 0 3 227 89 163 MFI5257301.1 hypothetical protein [Gemmatimonadales bacterium] diamond 675 92.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;