RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA495391", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA495391 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20878568 20878568 PRJNA495391_S_NODE_49457_length_176_cov_1.127660_g48405_i0 PRJNA495391 49457 176 1.12766 1.9846816 Candidatus Nanosynbacter sp. BB002 3393757 Bacteria Bacteria 193 8.39e-45   NTclustered gi|2692798772|gb|CP146064.1| 3393757 g48405 i0 86.364 1 176 24 100 0 1 176 678061 677886 Candidatus Nanosynbacter sp. BB002 chromosome, complete genome blastn 176 193 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. BB002
28245322 28245322 PRJNA495391_S_NODE_38306_length_198_cov_0.969325_g37254_i0 PRJNA495391 38306 198 0.969325 1.9192635 Candidatus Nanosynbacter sp. 2725945 Bacteria Bacteria 129 1.96e-33   NR MBF1032827.1 2725945 g37254 i0 100 0.984848484848485 65 0 98.5 0 197 3 244 308 MBF1032827.1 glycosyltransferase [Candidatus Nanosynbacter sp.] diamond 195 129 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp.
28245342 28245342 PRJNA495391_S_NODE_71026_length_150_cov_1.530435_g69974_i0 PRJNA495391 71026 150 1.530435 2.2956525 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 97.8 4.27e-22   NR MBB1558591.1 2026720 g69974 i0 96 2 50 2 100 0 150 1 440 489 MBB1558591.1 PAS domain-containing protein [Candidatus Saccharibacteria bacterium] diamond 300 97.8 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;