RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA494251" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA494251 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10678672 10678672 PRJNA494251_P_NODE_10829_length_409_cov_1.172619_g10523_i0 PRJNA494251 10829 409 1.172619 4.79601171 root 1 Root_unresolved Root_unresolved 175 1.39e-50   NR HEX7072129.1 2306054 g10523 i0 63 12.0440097799511 138 49 99.8 2 409 2 36 173 HEX7072129.1 PEP/pyruvate-binding domain-containing protein [Rhodothermales bacterium] diamond 4926 176 0.994318181818182 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
32195024 32195024 PRJNA494251_P_NODE_17418_length_336_cov_1.171103_g17104_i0 PRJNA494251 17418 336 1.171103 3.93490608 Rhodothermales bacterium 2306054 Bacteria Bacteria 205 2.2000000000000002e-65   NR HYE58889.1 2306054 g17104 i0 89.2 0.991071428571429 111 12 99.1 0 335 3 46 156 HYE58889.1 AP2 domain-containing protein [Rhodothermales bacterium] diamond 333 205 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
32527313 32527313 PRJNA494251_P_NODE_29459_length_274_cov_1.149254_g29145_i0 PRJNA494251 29459 274 1.149254 3.14895596 Pseudomonadati 3379134 Bacteria Bacteria 89.7 8.25e-20   NR NNF56918.1 2026787 g29145 i0 46.1 4.83941605839416 89 48 97.4 0 274 8 122 210 NNF56918.1 porin [Rhodothermaceae bacterium] diamond 1326 90.5 0.991160220994475 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;