RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA494251" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA494251 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
475400 475400 PRJNA494251_P_NODE_29801_length_272_cov_3.201005_g29487_i0 PRJNA494251 29801 272 3.201005 8.7067336 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 63.9 1.15e-5   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g29487 i0 88.462 0.6875 52 6 19 0 106 157 2605 2554 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 187 63.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26633698 26633698 PRJNA494251_P_NODE_16861_length_340_cov_3.258427_g16548_i0 PRJNA494251 16861 340 3.258427 11.0786518 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 116 4.6199999999999995e-30   NR XP_068360038.1 1144522 g16548 i0 52.3 4.85294117647059 111 53 97.9 0 339 7 63 173 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 1650 116 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26633722 26633722 PRJNA494251_P_NODE_35301_length_255_cov_1.538462_g34987_i0 PRJNA494251 35301 255 1.538462 3.9230781 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 67 2.68e-11   NR XP_067770116.1 135588 g34987 i0 45.8 0.976470588235294 83 44 96.5 1 5 250 90 172 XP_067770116.1 uncharacterized protein GO595_009806 [Histomonas meleagridis] diamond 249 67 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27076904 27076904 PRJNA494251_P_NODE_14022_length_367_cov_4.003401_g13714_i0 PRJNA494251 14022 367 4.003401 14.69248167 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 110 2.09e-28   NR XP_067769820.1 135588 g13714 i0 61 0.670299727520436 82 32 67 0 264 19 31 112 XP_067769820.1 uncharacterized protein GO595_009871 [Histomonas meleagridis] diamond 246 110 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27250514 27250514 PRJNA494251_P_NODE_22723_length_302_cov_1.244541_g22409_i0 PRJNA494251 22723 302 1.244541 3.75851382 root 1 Root_unresolved Root_unresolved 50.8 7.7e-5   NR XP_068361433.1 1144522 g22409 i0 55.6 1.2317880794702 36 16 35.8 0 42 149 146 181 XP_068361433.1 Alpha-tubulin N-acetyltransferase [Tritrichomonas foetus] diamond 372 51.2 0.9921875 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29413622 29413622 PRJNA494251_P_NODE_1829_length_878_cov_1.918012_g1603_i0 PRJNA494251 1829 878 1.918012 16.84014536 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 75.1 3.48e-12   NR XP_001304133.1 412133 g1603 i0 28.4 0.57744874715262 169 115 56.4 4 875 381 1 167 XP_001304133.1 GTPase protein [Trichomonas vaginalis G3] diamond 507 75.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29413626 29413626 PRJNA494251_P_NODE_19689_length_319_cov_2.032520_g19375_i0 PRJNA494251 19689 319 2.03252 6.4837388 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 129 8.54e-34   NR XP_068363371.1 1144522 g19375 i0 67.8 3.1128526645768 87 28 81.8 0 16 276 1 87 XP_068363371.1 DnaJ subfamily B member 4 [Tritrichomonas foetus] diamond 993 129 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30013822 30013822 PRJNA494251_P_NODE_28491_length_277_cov_1.985294_g28177_i0 PRJNA494251 28491 277 1.985294 5.49926438 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 110 4.49e-28   NR XP_001299092.1 412133 g28177 i0 56.5 3.97472924187726 92 39 98.6 1 274 2 68 159 XP_001299092.1 peroxiredoxin protein [Trichomonas vaginalis G3] diamond 1101 110 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30424910 30424910 PRJNA494251_P_NODE_24133_length_295_cov_1.324324_g23819_i0 PRJNA494251 24133 295 1.324324 3.9067558 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 53.5 1e-5   NR XP_068368100.1 1144522 g23819 i0 42.3 0.528813559322034 52 30 52.9 0 158 3 7 58 XP_068368100.1 CMGC family protein kinase [Tritrichomonas foetus] diamond 156 53.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30440216 30440216 PRJNA494251_P_NODE_24733_length_292_cov_1.406393_g24419_i0 PRJNA494251 24733 292 1.406393 4.10666756 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 74.7 4.05e-13   NR XP_067773013.1 135588 g24419 i0 40.6 3.0513698630137 101 56 99.7 3 2 292 947 1047 XP_067773013.1 DNA-directed RNA polymerase II subunit RPB1 [Histomonas meleagridis] diamond 891 74.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31846837 31846837 PRJNA494251_P_NODE_15377_length_354_cov_1.462633_g15064_i0 PRJNA494251 15377 354 1.462633 5.17772082 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 48.1 0.00107   NR XP_067777083.1 135588 g15064 i0 35.6 1.86440677966102 101 39 64.4 3 126 353 1 100 XP_067777083.1 14-3-3 protein [Histomonas meleagridis] diamond 660 48.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32258650 32258650 PRJNA494251_P_NODE_46178_length_244_cov_0.888889_g45864_i0 PRJNA494251 46178 244 0.888889 2.16888916 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 65.9 5.63e-11   NR XP_001315246.1 412133 g45864 i0 44.1 0.836065573770492 68 37 82.4 1 243 43 70 137 XP_001315246.1 calcium ion binding [Trichomonas vaginalis G3] diamond 204 65.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;