RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA494251", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA494251 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6853280 6853280 PRJNA494251_S_NODE_526_length_297_cov_0.776786_g511_i0 PRJNA494251 526 297 0.776786 2.30705442 Olpidium brassicae 70189 Fungi Fungi 156 2.04e-33   NTclustered gi|358030887|dbj|AB609177.1| 70189 g511 i0 79.545 12.6531986531987 220 43 74 2 66 284 1333 1115 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 3758 156 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
20876870 20876870 PRJNA494251_P_NODE_14857_length_359_cov_1.758741_g14545_i0 PRJNA494251 14857 359 1.758741 6.31388019 Eukaryota 2759 Fungi Fungi 170 2.329999999999999e-47   NR BAL15351.1 278681 g14545 i0 63.6 3.94428969359331 118 43 98.6 0 358 5 152 269 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 1416 170 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
31119284 31119284 PRJNA494251_P_NODE_36235_length_252_cov_2.150838_g35921_i0 PRJNA494251 36235 252 2.150838 5.42011176 Olpidium bornovanus 278681 Fungi Fungi 43.9 0.00403   NR KAG5457500.1 278681 g35921 i0 48.4 2.78571428571429 64 25 71.4 3 226 47 16 75 KAG5457500.1 MAG: camp-regulated phosphoprotein/endosulfine conserved region-domain-containing protein [Olpidium bornovanus] diamond 702 43.9 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;