RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA494251", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA494251 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10678941 10678941 PRJNA494251_P_NODE_30349_length_270_cov_3.401015_g30035_i0 PRJNA494251 30349 270 3.401015 9.1827405 Symbiopectobacterium purcellii 2871826 Bacteria Bacteria 230 1.0699999999999995e-55   NTclustered gi|2087438146|gb|CP081864.1| 2871826 g30035 i0 83.071 94.7148148148148 254 41 94 2 15 267 4118216 4118468 Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome blastn 25573 230 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium purcellii
11954130 11954130 PRJNA494251_P_NODE_34970_length_256_cov_1.535519_g34656_i0 PRJNA494251 34970 256 1.535519 3.93092864 Symbiopectobacterium purcellii 2871826 Bacteria Bacteria 75 4.97e-9   NTclustered gi|2087438146|gb|CP081864.1| 2871826 g34656 i0 87.5 0.734375 64 8 25 0 22 85 995406 995469 Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome blastn 188 75 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium purcellii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;