RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA494251", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA494251 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20877031 20877031 PRJNA494251_P_NODE_25657_length_288_cov_1.432558_g25343_i0 PRJNA494251 25657 288 1.432558 4.12576704 Pseudomonadati 3379134 Bacteria Bacteria 154 1.17e-43   NR MBO7328062.1 2053569 g25343 i0 70.5 6.91666666666667 95 28 99 0 287 3 207 301 MBO7328062.1 GDP-mannose 4,6-dehydratase [Lentisphaeria bacterium] diamond 1992 154 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
27866479 27866479 PRJNA494251_P_NODE_30865_length_269_cov_1.178571_g30551_i0 PRJNA494251 30865 269 1.178571 3.17035599 Victivallales bacterium 2212475 Bacteria Bacteria 44.7 0.0107   NR MBP5674454.1 2212475 g30551 i0 62.5 1.51672862453532 32 12 35.7 0 103 8 23 54 MBP5674454.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Victivallales bacterium] diamond 408 44.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
28103054 28103054 PRJNA494251_P_NODE_43845_length_245_cov_1.755814_g43531_i0 PRJNA494251 43845 245 1.755814 4.3017443 Pseudomonadati 3379134 Bacteria Bacteria 48.1 4.6e-4   NR RMD81226.1 1932692 g43531 i0 37.2 3.85714285714286 78 40 94.3 2 2 232 222 291 RMD81226.1 MAG: serine/threonine protein kinase, partial [Lentisphaerota bacterium] diamond 945 48.5 0.991752577319588 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29003722 29003722 PRJNA494251_P_NODE_15768_length_350_cov_1.931408_g15455_i0 PRJNA494251 15768 350 1.931408 6.759928 Lentisphaeria bacterium 2053569 Bacteria Bacteria 44.7 0.0275   NR HQL08285.1 2053569 g15455 i0 46.5 0.737142857142857 43 23 36.9 0 107 235 1224 1266 HQL08285.1 FG-GAP-like repeat-containing protein [Lentisphaeria bacterium] diamond 258 44.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;