contig_metadata
12 rows where bioproject = "PRJNA493828" and tax_phylum = "Nitrospirota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2382239 | 2382239 | PRJNA493828_P_NODE_45262_length_217_cov_4.236111_g44843_i0 | PRJNA493828 | 45262 | 217 | 4.236111 | 9.19236087 | Nitrospira | 1234 | Bacteria | Bacteria | 350 | 6.07e-92 | NTclustered | gi|922305621|gb|CP011801.1| | 42253 | g44843 | i0 | 98.01 | 148.764976958525 | 201 | 4 | 93 | 0 | 17 | 217 | 1279050 | 1278850 | Nitrospira moscoviensis strain NSP M-1, complete genome | blastn | 32282 | 350 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira moscoviensis | ||
| 2382268 | 2382268 | PRJNA493828_P_NODE_4742_length_504_cov_2.529002_g4352_i0 | PRJNA493828 | 4742 | 504 | 2.529002 | 12.74617008 | Nitrospira | 1234 | Bacteria | Bacteria | 819 | 0 | NTclustered | gi|922305621|gb|CP011801.1| | 42253 | g4352 | i0 | 96.032 | 239.323412698413 | 504 | 19 | 100 | 1 | 1 | 504 | 1278613 | 1278111 | Nitrospira moscoviensis strain NSP M-1, complete genome | blastn | 120619 | 826 | 0.991525423728814 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira moscoviensis | ||
| 4301612 | 4301612 | PRJNA493828_P_NODE_30364_length_255_cov_2.010989_g29945_i0 | PRJNA493828 | 30364 | 255 | 2.010989 | 5.12802195 | Nitrospira moscoviensis | 42253 | Bacteria | Bacteria | 466 | 6.98e-127 | NTclustered | gi|922305621|gb|CP011801.1| | 42253 | g29945 | i0 | 99.608 | 2 | 255 | 1 | 100 | 0 | 1 | 255 | 113687 | 113941 | Nitrospira moscoviensis strain NSP M-1, complete genome | blastn | 510 | 466 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira moscoviensis | ||
| 5578244 | 5578244 | PRJNA493828_P_NODE_26325_length_266_cov_2.922280_g25906_i0 | PRJNA493828 | 26325 | 266 | 2.92228 | 7.7732648 | Candidatus Nitrospira kreftii | 2652173 | Bacteria | Bacteria | 438 | 1.6e-118 | NTclustered | gi|1884724763|gb|CP047423.1| | 2652173 | g25906 | i0 | 97.647 | 285.071428571429 | 255 | 6 | 96 | 0 | 1 | 255 | 2707774 | 2707520 | Candidatus Nitrospira kreftii isolate comreactor17 chromosome, complete genome | blastn | 75829 | 438 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Candidatus Nitrospira kreftii | ||
| 10678520 | 10678520 | PRJNA493828_P_NODE_44949_length_219_cov_5.712329_g44530_i0 | PRJNA493828 | 44949 | 219 | 5.712329 | 12.51000051 | Nitrospira moscoviensis | 42253 | Bacteria | Bacteria | 355 | 1.32e-93 | NTclustered | gi|922305621|gb|CP011801.1| | 42253 | g44530 | i0 | 95.89 | 258.803652968037 | 219 | 9 | 100 | 0 | 1 | 219 | 1277864 | 1278082 | Nitrospira moscoviensis strain NSP M-1, complete genome | blastn | 56678 | 355 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira moscoviensis | ||
| 11953499 | 11953499 | PRJNA493828_P_NODE_33770_length_248_cov_13.965714_g33351_i0 | PRJNA493828 | 33770 | 248 | 13.965714 | 34.63497072 | Candidatus Nitrospira kreftii | 2652173 | Bacteria | Bacteria | 435 | 1.91e-117 | NTclustered | gi|1884724763|gb|CP047423.1| | 2652173 | g33351 | i0 | 98.776 | 146.552419354839 | 245 | 2 | 99 | 1 | 4 | 248 | 2705030 | 2704787 | Candidatus Nitrospira kreftii isolate comreactor17 chromosome, complete genome | blastn | 36345 | 435 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Candidatus Nitrospira kreftii | ||
| 13228540 | 13228540 | PRJNA493828_P_NODE_29851_length_256_cov_3.142077_g29432_i0 | PRJNA493828 | 29851 | 256 | 3.142077 | 8.04371712 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 473 | 4.189999999999999e-129 | NTclustered | gi|2290915413|gb|CP060502.1| | 70125 | g29432 | i0 | 100 | 2 | 256 | 0 | 100 | 0 | 1 | 256 | 195858 | 195603 | MAG: Nitrospira sp. isolate NSFW plasmid pNSFW1, complete sequence | blastn | 512 | 473 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 30076731 | 30076731 | PRJNA493828_P_NODE_46212_length_209_cov_7.875000_g45793_i0 | PRJNA493828 | 46212 | 209 | 7.875 | 16.45875 | Nitrospirota bacterium | 2026887 | Bacteria | Bacteria | 74.3 | 1.64e-13 | NR | MEK6803703.1 | 2026887 | g45793 | i0 | 49.3 | 0.990430622009569 | 69 | 35 | 99 | 0 | 3 | 209 | 54 | 122 | MEK6803703.1 restriction endonuclease subunit S [Nitrospirota bacterium] | diamond | 207 | 74.3 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospirota bacterium | ||||||
| 30298530 | 30298530 | PRJNA493828_P_NODE_23072_length_277_cov_1.348039_g22653_i0 | PRJNA493828 | 23072 | 277 | 1.348039 | 3.73406803 | Nitrospirota bacterium | 2026887 | Bacteria | Bacteria | 87.8 | 6.74e-20 | NR | MEK7305963.1 | 2026887 | g22653 | i0 | 83.7 | 1.54873646209386 | 49 | 8 | 53.1 | 0 | 1 | 147 | 83 | 131 | MEK7305963.1 HPF/RaiA family ribosome-associated protein [Nitrospirota bacterium] | diamond | 429 | 87.8 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospirota bacterium | ||||||
| 30898502 | 30898502 | PRJNA493828_P_NODE_39374_length_241_cov_2.190476_g38955_i0 | PRJNA493828 | 39374 | 241 | 2.190476 | 5.27904716 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 140 | 9.64e-37 | NR | MBH0192353.1 | 70125 | g38955 | i0 | 93.8 | 0.995850622406639 | 80 | 5 | 99.6 | 0 | 241 | 2 | 256 | 335 | MBH0192353.1 GAF domain-containing protein [Nitrospira sp.] | diamond | 240 | 140 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31182414 | 31182414 | PRJNA493828_P_NODE_38715_length_242_cov_1.414201_g38296_i0 | PRJNA493828 | 38715 | 242 | 1.414201 | 3.42236642 | Nitrospiraceae bacterium | 2026770 | Bacteria | Bacteria | 99.8 | 6.049999999999999e-24 | NR | HYM89160.1 | 2026770 | g38296 | i0 | 61.7 | 1.00413223140496 | 81 | 30 | 99.2 | 1 | 3 | 242 | 38 | 118 | HYM89160.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Nitrospiraceae bacterium] | diamond | 243 | 99.8 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospiraceae bacterium | |||
| 31783509 | 31783509 | PRJNA493828_P_NODE_26377_length_266_cov_2.295337_g25958_i0 | PRJNA493828 | 26377 | 266 | 2.295337 | 6.10559642 | Nitrospiraceae bacterium | 2026770 | Bacteria | Bacteria | 120 | 2.29e-30 | NR | HXT67641.1 | 2026770 | g25958 | i0 | 69.7 | 0.857142857142857 | 76 | 22 | 84.6 | 1 | 2 | 226 | 284 | 359 | HXT67641.1 hypothetical protein [Nitrospiraceae bacterium] | diamond | 228 | 120 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospiraceae bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;