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contig_metadata

6 rows where bioproject = "PRJNA493828" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493828 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3025533 3025533 PRJNA493828_P_NODE_24583_length_272_cov_1.527638_g24164_i0 PRJNA493828 24583 272 1.527638 4.15517536 Methanobrevibacter millerae 230361 Archaea Archaea 460 3.5e-125   NTclustered gi|968564921|gb|CP011266.1| 230361 g24164 i0 97.091 137.525735294118 275 5 100 1 1 272 541931 542205 Methanobrevibacter millerae strain SM9, complete genome blastn 37407 460 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
18326307 18326307 PRJNA493828_P_NODE_25375_length_269_cov_3.158163_g24956_i0 PRJNA493828 25375 269 3.158163 8.49545847 Halalkalicoccus salilacus 3117459 Archaea Archaea 497 2.63e-136   NTclustered gi|2674869203|gb|CP144461.1| 3117459 g24956 i0 100 134.405204460967 269 0 100 0 1 269 3202265 3201997 Halalkalicoccus salilacus strain FCH27 chromosome, complete genome blastn 36155 497 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus salilacus
20876554 20876554 PRJNA493828_P_NODE_35837_length_246_cov_0.890173_g35418_i0 PRJNA493828 35837 246 0.890173 2.18982558 uncultured euryarchaeote 114243 Archaea Archaea 433 6.79e-117   NTclustered gi|196122313|gb|EU888367.1| 114243 g35418 i0 98.387 100.731707317073 248 0 100 4 1 246 788 543 Uncultured euryarchaeote clone Q14 16S ribosomal RNA gene, partial sequence blastn 24780 433 1 Archaea   Methanobacteriati Methanobacteriota         uncultured euryarchaeote
23427453 23427453 PRJNA493828_P_NODE_6399_length_437_cov_259.164835_g5999_i0 PRJNA493828 6399 437 259.164835 1132.55032895 uncultured Methanoregula sp. 1005933 Archaea Archaea 758 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g5999 i0 98.157 324.29290617849 434 8 99 0 4 437 3117554 3117121 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 141716 758 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
28513667 28513667 PRJNA493828_P_NODE_18127_length_296_cov_0.995516_g17708_i0 PRJNA493828 18127 296 0.995516 2.94672736 Methanobacteriati 3366610 Archaea Archaea 43.5 0.0366   NR MAI09409.1 2026739 g17708 i0 40 0.810810810810811 40 24 40.5 0 292 173 81 120 MAI09409.1 hypothetical protein [Methanobacteriota archaeon] diamond 240 43.5 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32432191 32432191 PRJNA493828_P_NODE_36879_length_244_cov_3.122807_g36460_i0 PRJNA493828 36879 244 3.122807 7.61964908 Candidatus Methanofastidiosum 2666130 Archaea Archaea 154 4.8899999999999986e-43   NR NMC77251.1 2099674 g36460 i0 97.5 1.9672131147541 80 2 98.4 0 3 242 174 253 NMC77251.1 aspartate--tRNA(Asn) ligase [Candidatus Methanofastidiosia archaeon] diamond 480 154 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia       Candidatus Methanofastidiosia archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;