RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA493828" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493828 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8759501 8759501 PRJNA493828_P_NODE_29147_length_258_cov_2.562162_g28728_i0 PRJNA493828 29147 258 2.562162 6.61037796 Lentisphaerota bacterium 1932692 Bacteria Bacteria 97.1 2.49e-22   NR MBN1558334.1 1932692 g28728 i0 66.3 2 86 29 100 0 258 1 63 148 MBN1558334.1 SDR family oxidoreductase [Lentisphaerota bacterium] diamond 516 97.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28134906 28134906 PRJNA493828_P_NODE_15225_length_310_cov_3.215190_g14806_i0 PRJNA493828 15225 310 3.21519 9.967089 Bacteria 2 Bacteria Bacteria 94.4 5.21e-21   NR MEI8353947.1 1932692 g14806 i0 80.4 7.6741935483871 56 11 54.2 0 3 170 190 245 MEI8353947.1 IS21-like element helper ATPase IstB [Lentisphaerota bacterium] diamond 2379 94.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;