RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493828" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27772041 27772041 PRJNA493828_P_NODE_30284_length_255_cov_2.489011_g29865_i0 PRJNA493828 30284 255 2.489011 6.34697805 Paracentrotus lividus 7656 Echinodermata other_Eukaryota 57 4.14e-7   NR CAD42182.3 7656 g29865 i0 65.8 0.447058823529412 38 13 44.7 0 18 131 1490 1527 CAD42182.3 DNA methyltransferase [Paracentrotus lividus] diamond 114 57 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Echinidae Paracentrotus Paracentrotus lividus
28955921 28955921 PRJNA493828_P_NODE_4508_length_514_cov_2.580499_g4120_i0 PRJNA493828 4508 514 2.580499 13.26376486 Metazoa 33208 Echinodermata other_Eukaryota 128 2.94e-34   NR XP_022094804.1 133434 g4120 i0 58.6 3.29182879377432 111 46 64.8 0 500 168 5 115 XP_022094804.1 60S ribosomal protein L24-like [Acanthaster planci] diamond 1692 128 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
30929980 30929980 PRJNA493828_P_NODE_32614_length_250_cov_1.610169_g32195_i0 PRJNA493828 32614 250 1.610169 4.0254225 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 59.7 4.31e-8   NR KAJ8048251.1 206669 g32195 i0 42.9 2.856 63 36 75.6 0 201 13 2 64 KAJ8048251.1 hypothetical protein HOLleu_00494 [Holothuria leucospilota] diamond 714 59.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;