RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA493828" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA493828 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
474712 474712 PRJNA493828_P_NODE_26761_length_265_cov_2.026042_g26342_i0 PRJNA493828 26761 265 2.026042 5.3690113 Navicula veneta 138539 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.85e-13   NTclustered gi|2088232805|ref|NC_056793.1| 138539 g26342 i0 79.688 17.8301886792453 128 23 48 3 124 249 22625 22751 Navicula veneta isolate SZCZR1826 mitochondrion, complete genome blastn 4725 89.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula veneta
1749324 1749324 PRJNA493828_P_NODE_1002_length_1057_cov_4.125000_g751_i0 PRJNA493828 1002 1057 4.125 43.60125 Navicula incertata 2014769 SAR_Eukaryotes SAR_Eukaryotes 182 1.31e-40   NTclustered gi|2866543349|gb|PQ722532.1| 2014769 g751 i0 83.854 16.4834437086093 192 29 18 2 839 1029 45421 45611 Navicula incertata mitochondrion, complete genome blastn 17423 182 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula incertata
3025426 3025426 PRJNA493828_P_NODE_18243_length_295_cov_1.387387_g17824_i0 PRJNA493828 18243 295 1.387387 4.09279165 Psammoneis japonica 517775 SAR_Eukaryotes SAR_Eukaryotes 174 5.6e-39   NTclustered gi|1418586704|ref|NC_037989.1| 517775 g17824 i0 79.767 72.9694915254237 257 38 85 6 1 251 59811 60059 Psammoneis japonica mitochondrion, complete genome blastn 21526 174 1 Eukaryota Sar   Bacillariophyta Mediophyceae Triceratiales Plagiogrammaceae Psammoneis Psammoneis japonica
3025938 3025938 PRJNA493828_P_NODE_7103_length_418_cov_11.852174_g6692_i0 PRJNA493828 7103 418 11.852174 49.54208732 Helicotheca tamesis 374047 SAR_Eukaryotes SAR_Eukaryotes 167 1.38e-36   NTclustered gi|2202538970|gb|OM891876.1| 374047 g6692 i0 78.058 52.255980861244 278 51 65 10 144 415 4583 4310 Helicotheca tamesis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21843 167 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Helicotheca Helicotheca tamesis
11309822 11309822 PRJNA493828_P_NODE_44589_length_222_cov_41.221477_g44170_i0 PRJNA493828 44589 222 41.221477 91.51167894 Navicula 50949 SAR_Eukaryotes SAR_Eukaryotes 78.7 3.25e-10   NTclustered gi|296065962|emb|FN397615.1| 649857 g44170 i0 91.525 27.0045045045045 59 2 27 2 161 219 79 24 Navicula trivialis 18S rRNA gene(partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene(partial), strain 2-HV25, clone 2 blastn 5995 78.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula trivialis
32400591 32400591 PRJNA493828_P_NODE_25019_length_270_cov_3.497462_g24600_i0 PRJNA493828 25019 270 3.497462 9.4431474 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.77e-6   NR KAL3786977.1 29204 g24600 i0 72.5 4.64444444444444 40 11 44.4 0 1 120 686 725 KAL3786977.1 hypothetical protein HJC23_005488 [Cyclotella cryptica] diamond 1254 55.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;