RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493828", tax_kingdom = "Metazoa" and tax_phylum = "Gastrotricha"

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tax_superkingdom 1

tax_phylum 1

  • Gastrotricha · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7484417 7484417 PRJNA493828_P_NODE_14346_length_311_cov_2.105042_g13927_i0 PRJNA493828 14346 311 2.105042 6.54668062 Chaetonotidae 41372 Gastrotricha other_Eukaryota 536 6.579999999999997e-148   NTclustered gi|1748013997|gb|MN496265.1| 2259389 g13927 i0 97.749 99.5980707395498 311 7 100 0 1 311 2443 2133 Chaetonotus gelidus voucher HA_24.17 large subunit ribosomal RNA gene, partial sequence blastn 30975 536 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Chaetonotus Chaetonotus gelidus
14503419 14503419 PRJNA493828_P_NODE_27732_length_262_cov_2.343915_g27313_i0 PRJNA493828 27732 262 2.343915 6.1410573 Aspidiophorus ophiodermus 1194609 Gastrotricha other_Eukaryota 294 3.6e-75   NTclustered gi|389075577|gb|JN185510.1| 1194609 g27313 i0 87.121 46.1717557251908 264 28 100 5 1 262 533 792 Aspidiophorus ophiodermus voucher TK112 28S ribosomal RNA gene, partial sequence blastn 12097 294 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Aspidiophorus Aspidiophorus ophiodermus
24701029 24701029 PRJNA493828_P_NODE_9820_length_363_cov_3.603448_g9402_i0 PRJNA493828 9820 363 3.603448 13.08051624 Heterolepidoderma striatum 3024583 Gastrotricha other_Eukaryota 627 4.499999999999999e-175   NTclustered gi|2438068307|gb|OQ358129.1| 3024583 g9402 i0 97.796 94.1570247933884 363 8 100 0 1 363 954 592 Chaetonotidae gen n. sp. s PV-2023 isolate DB 12 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 34179 627 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Heterolepidoderma Heterolepidoderma striatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;