RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493828", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9402861 9402861 PRJNA493828_P_NODE_40948_length_237_cov_2.969512_g40529_i0 PRJNA493828 40948 237 2.969512 7.03774344 Vulcanimicrobium alpinum 3016050 Bacteria Bacteria 95.3 3.48e-15   NTclustered gi|2416250577|dbj|AP025523.1| 3016050 g40529 i0 78.873 4.46835443037975 142 29 59 1 7 147 1950339 1950480 Vulcanimicrobium alpinum WC8-2 DNA, complete genome blastn 1059 95.3 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Vulcanimicrobium Vulcanimicrobium alpinum
23427065 23427065 PRJNA493828_P_NODE_24379_length_272_cov_5.884422_g23960_i0 PRJNA493828 24379 272 5.884422 16.00562784 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 182 3.05e-41   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g23960 i0 82.407 4.13970588235294 216 31 78 6 60 272 5032845 5032634 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 1126 182 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
24700371 24700371 PRJNA493828_P_NODE_10240_length_357_cov_2.253521_g9821_i0 PRJNA493828 10240 357 2.253521 8.04506997 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 239 2.42e-58   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g9821 i0 80.178 134.854341736695 338 51 94 15 26 357 5032671 5032344 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 48143 239 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;