RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493828", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA493828 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3025836 3025836 PRJNA493828_P_NODE_43663_length_227_cov_4.668831_g43244_i0 PRJNA493828 43663 227 4.668831 10.59824637 Armatimonadota bacterium 2033014 Bacteria Bacteria 252 1.86e-62   NTclustered gi|2621703062|emb|OY760504.1| 2033014 g43244 i0 91.304 345.246696035242 184 16 81 0 41 224 2411146 2410963 MAG: Armatimonadota bacterium isolate be0b92b7-bbec-405b-9e81-a5dbe9f1ff7a genome assembly, chromosome: 1 blastn 78371 252 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
9402559 9402559 PRJNA493828_P_NODE_20848_length_284_cov_3.018957_g20429_i0 PRJNA493828 20848 284 3.018957 8.57383788 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 285 2.37e-72   NTclustered gi|1938770100|gb|CP054189.1| 2739509 g20429 i0 87.302 356.718309859155 252 29 88 3 13 262 126390 126640 MAG: Chthonomonadaceae bacterium isolate H1_ARM1 chromosome, complete genome blastn 101308 285 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
29145451 29145451 PRJNA493828_P_NODE_34209_length_248_cov_1.268571_g33790_i0 PRJNA493828 34209 248 1.268571 3.14605608 Bacteria 2 Bacteria Bacteria 111 2.67e-27   NR CAA9291214.1 157466 g33790 i0 69.6 9.59274193548387 79 24 95.6 0 241 5 211 289 CAA9291214.1 Transposase, mutator type, partial [uncultured Armatimonadetes bacterium] diamond 2379 111 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;