RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493828", tax_clade = "Stenosarchaea group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA493828 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18326307 18326307 PRJNA493828_P_NODE_25375_length_269_cov_3.158163_g24956_i0 PRJNA493828 25375 269 3.158163 8.49545847 Halalkalicoccus salilacus 3117459 Archaea Archaea 497 2.63e-136   NTclustered gi|2674869203|gb|CP144461.1| 3117459 g24956 i0 100 134.405204460967 269 0 100 0 1 269 3202265 3201997 Halalkalicoccus salilacus strain FCH27 chromosome, complete genome blastn 36155 497 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus salilacus
23427453 23427453 PRJNA493828_P_NODE_6399_length_437_cov_259.164835_g5999_i0 PRJNA493828 6399 437 259.164835 1132.55032895 uncultured Methanoregula sp. 1005933 Archaea Archaea 758 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g5999 i0 98.157 324.29290617849 434 8 99 0 4 437 3117554 3117121 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 141716 758 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
32432191 32432191 PRJNA493828_P_NODE_36879_length_244_cov_3.122807_g36460_i0 PRJNA493828 36879 244 3.122807 7.61964908 Candidatus Methanofastidiosum 2666130 Archaea Archaea 154 4.8899999999999986e-43   NR NMC77251.1 2099674 g36460 i0 97.5 1.9672131147541 80 2 98.4 0 3 242 174 253 NMC77251.1 aspartate--tRNA(Asn) ligase [Candidatus Methanofastidiosia archaeon] diamond 480 154 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia       Candidatus Methanofastidiosia archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;