RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA493828", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

  • Eukaryota · 5 ✖

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA493828 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8759506 8759506 PRJNA493828_P_NODE_29527_length_257_cov_2.402174_g29108_i0 PRJNA493828 29527 257 2.402174 6.17358718 Tritrichomonas 5723 Parabasalia other_Eukaryota 154 6.23e-33   NTclustered gi|2274983416|gb|OP038912.1| 5725 g29108 i0 90.598 10.7198443579767 117 10 45 1 142 257 198 314 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 2755 154 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
13228316 13228316 PRJNA493828_P_NODE_15831_length_310_cov_2.713080_g15412_i0 PRJNA493828 15831 310 2.71308 8.410548 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 272 2.04e-68   NTclustered gi|2274983416|gb|OP038912.1| 5725 g15412 i0 99.333 12.7774193548387 150 1 97 0 161 310 2050 2199 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 3961 272 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
16409335 16409335 PRJNA493828_P_NODE_44253_length_225_cov_13.565789_g43834_i0 PRJNA493828 44253 225 13.565789 30.52302525 Hexamitidae 5739 Fornicata other_Eukaryota 56.5 0.002   NTclustered gi|459348792|gb|KC249997.1| 28002 g43834 i0 92.5 0.355555555555556 40 2 17 1 56 94 523 484 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 80 56.5 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
22151608 22151608 PRJNA493828_P_NODE_8518_length_386_cov_4.453674_g8103_i0 PRJNA493828 8518 386 4.453674 17.19118164 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 4.73e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g8103 i0 90.385 0.603626943005181 52 2 13 3 113 163 2561 2610 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31309148 31309148 PRJNA493828_P_NODE_28575_length_260_cov_1.299465_g28156_i0 PRJNA493828 28575 260 1.299465 3.378609 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 79.7 4.56e-15   NR KAJ5078494.1 1746090 g28156 i0 50.6 0.957692307692308 83 41 95.8 0 257 9 539 621 KAJ5078494.1 alpha-actinin sarcomeric-like protein [Anaeramoeba ignava] diamond 249 79.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;