RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493828", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA493828 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8759506 8759506 PRJNA493828_P_NODE_29527_length_257_cov_2.402174_g29108_i0 PRJNA493828 29527 257 2.402174 6.17358718 Tritrichomonas 5723 Parabasalia other_Eukaryota 154 6.23e-33   NTclustered gi|2274983416|gb|OP038912.1| 5725 g29108 i0 90.598 10.7198443579767 117 10 45 1 142 257 198 314 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 2755 154 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
13228316 13228316 PRJNA493828_P_NODE_15831_length_310_cov_2.713080_g15412_i0 PRJNA493828 15831 310 2.71308 8.410548 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 272 2.04e-68   NTclustered gi|2274983416|gb|OP038912.1| 5725 g15412 i0 99.333 12.7774193548387 150 1 97 0 161 310 2050 2199 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 3961 272 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
22151608 22151608 PRJNA493828_P_NODE_8518_length_386_cov_4.453674_g8103_i0 PRJNA493828 8518 386 4.453674 17.19118164 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 4.73e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g8103 i0 90.385 0.603626943005181 52 2 13 3 113 163 2561 2610 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;