RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA493828", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA493828 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6852573 6852573 PRJNA493828_P_NODE_44026_length_226_cov_3.771242_g43607_i0 PRJNA493828 44026 226 3.771242 8.52300692 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 265 2.37e-66   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g43607 i0 89.252 698.579646017699 214 19 94 4 9 220 3830245 3830456 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 157879 265 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
9402844 9402844 PRJNA493828_P_NODE_39568_length_241_cov_1.375000_g39149_i0 PRJNA493828 39568 241 1.375 3.31375 Rhodothermales bacterium 2306054 Bacteria Bacteria 241 4.310000000000001e-59   NTclustered gi|2518540588|emb|OX638293.1| 2306054 g39149 i0 86.977 116.04979253112 215 27 89 1 28 241 447776 447562 MAG: Rhodothermales bacterium isolate 042ea3ce-0ccb-4c6a-82ee-eaa32ce74e6d genome assembly, chromosome: 1 blastn 27968 241 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
11309767 11309767 PRJNA493828_P_NODE_38309_length_242_cov_5.088757_g37890_i0 PRJNA493828 38309 242 5.088757 12.31479194 Rubrivirga 1434037 Bacteria Bacteria 398 2.4299999999999994e-106   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g37890 i0 96.281 364.421487603306 242 9 100 0 1 242 1308556 1308797 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 88190 401 0.992518703241895 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
23427011 23427011 PRJNA493828_P_NODE_20539_length_285_cov_4.264151_g20120_i0 PRJNA493828 20539 285 4.264151 12.15283035 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 102 2.58e-17   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g20120 i0 90.789 5.61754385964912 76 7 27 0 138 213 28513 28588 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 1601 102 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
24058393 24058393 PRJNA493828_P_NODE_26459_length_266_cov_1.595855_g26040_i0 PRJNA493828 26459 266 1.595855 4.2449743 Rhodothermales 1853224 Bacteria Bacteria 200 8.2099999999999995e-47   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g26040 i0 80.741 235.394736842105 270 40 99 9 4 266 2906598 2906334 Rhodothermaceae bacterium RA chromosome, complete genome blastn 62615 200 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
24058522 24058522 PRJNA493828_P_NODE_40219_length_240_cov_2.059880_g39800_i0 PRJNA493828 40219 240 2.05988 4.943712 Rhodothermus 29548 Bacteria Bacteria 191 4.38e-44   NTclustered gi|470485382|ref|NR_076698.1| 29549 g39800 i0 81.224 93.6291666666667 245 38 100 8 1 240 485 244 Rhodothermus marinus strain DSM 4252 23S ribosomal RNA gene, complete sequence blastn 22471 191 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;