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contig_metadata

9 rows where bioproject = "PRJNA493828", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 9 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 9 ✖

bioproject 1

  • PRJNA493828 · 9 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
474809 474809 PRJNA493828_P_NODE_33921_length_248_cov_2.954286_g33502_i0 PRJNA493828 33921 248 2.954286 7.32662928 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 163 9.93e-36   NTclustered gi|2874253978|emb|OY970303.1| 412054 g33502 i0 78.968 52.1895161290323 252 44 100 8 1 248 1904298 1904544 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 12943 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
3025719 3025719 PRJNA493828_P_NODE_36243_length_245_cov_2.162791_g35824_i0 PRJNA493828 36243 245 2.162791 5.29883795 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 398 2.47e-106   NTclustered gi|2874253978|emb|OY970303.1| 412054 g35824 i0 95.918 152.334693877551 245 10 100 0 1 245 1902465 1902709 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 37322 398 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
3025887 3025887 PRJNA493828_P_NODE_47463_length_202_cov_5.558140_g47044_i0 PRJNA493828 47463 202 5.55814 11.2274428 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 191 3.57e-44   NTclustered gi|2874253995|emb|OY970320.1| 246130 g47044 i0 84.211 46.6089108910891 209 20 100 13 1 202 232961 232759 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 9415 191 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
4301454 4301454 PRJNA493828_P_NODE_20084_length_287_cov_2.088785_g19665_i0 PRJNA493828 20084 287 2.088785 5.99481295 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 459 1.3399999999999999e-124   NTclustered gi|2874253938|emb|OY970263.1| 412054 g19665 i0 95.47 116.470383275261 287 13 100 0 1 287 803497 803783 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 33427 459 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9402612 9402612 PRJNA493828_P_NODE_24108_length_273_cov_3.085000_g23689_i0 PRJNA493828 24108 273 3.085 8.42205 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 375 1.3099999999999998e-99   NTclustered gi|575456455|gb|CP007128.1| 861299 g23689 i0 93.625 313.271062271062 251 16 92 0 22 272 3042895 3043145 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 85523 375 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
10678425 10678425 PRJNA493828_P_NODE_37529_length_243_cov_5.741176_g37110_i0 PRJNA493828 37529 243 5.741176 13.95105768 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 303 5.48e-78   NTclustered gi|575456455|gb|CP007128.1| 861299 g37110 i0 89.873 285.333333333333 237 23 97 1 5 240 3045269 3045033 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 69336 303 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
13228556 13228556 PRJNA493828_P_NODE_30631_length_254_cov_2.950276_g30212_i0 PRJNA493828 30631 254 2.950276 7.49370104 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 111 3.75e-20   NTclustered gi|2874254107|emb|OY970192.1| 412054 g30212 i0 87.755 1.51968503937008 98 9 38 3 1 97 1255804 1255709 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 386 111 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13228772 13228772 PRJNA493828_P_NODE_45191_length_217_cov_6.631944_g44772_i0 PRJNA493828 45191 217 6.631944 14.39131848 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 265 2.26e-66   NTclustered gi|2874253978|emb|OY970303.1| 412054 g44772 i0 90.909 85.0460829493088 198 16 91 2 4 201 1903713 1903518 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 18455 265 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17052288 17052288 PRJNA493828_P_NODE_47374_length_203_cov_4.061538_g46955_i0 PRJNA493828 47374 203 4.061538 8.24492214 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 305 1.23e-78   NTclustered gi|2874253755|emb|OY969695.1| 412054 g46955 i0 97.222 485.689655172414 180 5 89 0 16 195 342874 343053 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 98595 305 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;