RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA493828", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA493828 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27740595 27740595 PRJNA493828_P_NODE_12824_length_325_cov_2.575397_g12405_i0 PRJNA493828 12824 325 2.575397 8.37004025 Candidatus Fibrimonadaceae bacterium 2872174 Bacteria Bacteria 58.2 3.14e-7   NR MDR2594697.1 2872174 g12405 i0 69 0.941538461538462 42 13 38.8 0 200 325 259 300 MDR2594697.1 hypothetical protein [Candidatus Fibrimonadaceae bacterium] diamond 306 58.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Candidatus Fibrimonadales Candidatus Fibrimonadaceae   Candidatus Fibrimonadaceae bacterium
28371685 28371685 PRJNA493828_P_NODE_14886_length_310_cov_3.624473_g14467_i0 PRJNA493828 14886 310 3.624473 11.2358663 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 45.4 0.0087   NR MCF0216704.1 2652288 g14467 i0 28.4 1.53870967741935 74 51 69.7 1 95 310 19 92 MCF0216704.1 iron-containing alcohol dehydrogenase [Fibrobacteraceae bacterium] diamond 477 45.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;