RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA493828", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA493828 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17052240 17052240 PRJNA493828_P_NODE_44174_length_226_cov_2.411765_g43755_i0 PRJNA493828 44174 226 2.411765 5.4505889 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 230 8.659999999999999e-56   NTclustered gi|2258829869|gb|CP060224.1| 2053688 g43755 i0 85.022 82.0663716814159 227 32 100 2 1 226 786392 786617 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-8 chromosome blastn 18547 230 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;