RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA493828" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA493828 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
474818 474818 PRJNA493828_P_NODE_3461_length_577_cov_7.902778_g3098_i0 PRJNA493828 3461 577 7.902778 45.59902906 Cavaliersmithia chaoae 3003318 Root_unresolved Root_unresolved 200 1.92e-46   NTclustered gi|2206682172|gb|OM966645.1| 3003318 g3098 i0 89.809 26.6759098786828 157 15 27 1 398 554 6608 6453 Cavaliersmithia chaoae strain FABANU small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15392 200 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Cavaliersmithia Cavaliersmithia chaoae
4301899 4301899 PRJNA493828_P_NODE_6824_length_426_cov_3.858357_g6415_i0 PRJNA493828 6824 426 3.858357 16.43660082 Cavaliersmithia chaoae 3003318 Root_unresolved Root_unresolved 137 1.1e-27   NTclustered gi|2206682172|gb|OM966645.1| 3003318 g6415 i0 92.632 22.1150234741784 95 7 22 0 2 96 6503 6597 Cavaliersmithia chaoae strain FABANU small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9421 137 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Cavaliersmithia Cavaliersmithia chaoae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;