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contig_metadata

13 rows where bioproject = "PRJNA493828", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 13 ✖

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA493828 · 13 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1106597 1106597 PRJNA493828_P_NODE_46881_length_205_cov_6.136364_g46462_i0 PRJNA493828 46881 205 6.136364 12.5795462 Vermamoeba 1260114 Tubulinea other_Eukaryota 379 7.229999999999999e-101   NTclustered gi|89243398|gb|DQ407529.1| 5778 g46462 i0 100 100.034146341463 205 0 100 0 1 205 238 442 Hartmannella vermiformis isolate WWS1.5 18S ribosomal RNA gene gene, partial sequence blastn 20507 379 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1749469 1749469 PRJNA493828_P_NODE_18162_length_295_cov_4.027027_g17743_i0 PRJNA493828 18162 295 4.027027 11.87972965 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 387 6.61e-103   NTclustered gi|909719645|gb|KT185625.1| 5778 g17743 i0 90.572 1.00677966101695 297 21 100 6 1 295 620 329 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 297 387 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1749965 1749965 PRJNA493828_P_NODE_7262_length_414_cov_418.568915_g6850_i0 PRJNA493828 7262 414 418.568915 1732.8753081 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 737 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g6850 i0 98.792 36.9903381642512 414 5 100 0 1 414 6691 7104 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15314 737 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6852084 6852084 PRJNA493828_P_NODE_11766_length_337_cov_3.147727_g11347_i0 PRJNA493828 11766 337 3.147727 10.60783999 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 182 3.89e-41   NTclustered gi|300078497|gb|GU001159.1| 200886 g11347 i0 77.532 39.2670623145401 316 62 93 8 1 312 3006 2696 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13233 182 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
8127672 8127672 PRJNA493828_P_NODE_23447_length_275_cov_5.584158_g23028_i0 PRJNA493828 23447 275 5.584158 15.3564345 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 377 3.67e-100   NTclustered gi|292559443|ref|NC_013986.1| 5778 g23028 i0 91.367 24.6472727272727 278 20 100 3 1 275 19373 19097 Hartmannella vermiformis mitochondrion, complete genome blastn 6778 377 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13859944 13859944 PRJNA493828_P_NODE_10611_length_352_cov_1.462366_g10192_i0 PRJNA493828 10611 352 1.462366 5.14752832 Saccamoeba 136463 Tubulinea other_Eukaryota 499 9.89e-137   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g10192 i0 92.179 97.2414772727273 358 21 100 5 1 352 1217 1573 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 34229 499 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
14503772 14503772 PRJNA493828_P_NODE_8132_length_394_cov_5.816199_g7717_i0 PRJNA493828 8132 394 5.816199 22.91582406 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 601 2.9799999999999993e-167   NTclustered gi|292559443|ref|NC_013986.1| 5778 g7717 i0 94.015 73.8984771573604 401 16 100 6 1 394 19990 20389 Hartmannella vermiformis mitochondrion, complete genome blastn 29116 601 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17052317 17052317 PRJNA493828_P_NODE_5114_length_486_cov_1.673123_g4724_i0 PRJNA493828 5114 486 1.673123 8.13137778 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 569 1.0599999999999997e-157   NTclustered gi|292559443|ref|NC_013986.1| 5778 g4724 i0 88.115 2.0679012345679 488 47 100 6 1 486 26636 27114 Hartmannella vermiformis mitochondrion, complete genome blastn 1005 569 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17684165 17684165 PRJNA493828_P_NODE_1514_length_867_cov_231.651134_g1212_i0 PRJNA493828 1514 867 231.651134 2008.41533178 Vermamoeba 1260114 Tubulinea other_Eukaryota 1524 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g1212 i0 98.385 46.8650519031142 867 14 100 0 1 867 3138 2272 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 40632 1524 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19600795 19600795 PRJNA493828_P_NODE_41856_length_234_cov_2.602484_g41437_i0 PRJNA493828 41856 234 2.602484 6.08981256 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 156 1.55e-33   NTclustered gi|17897590|emb|AJ314605.1| 160820 g41437 i0 89.6 21.8162393162393 125 10 53 3 108 230 225 102 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 5105 156 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
22151014 22151014 PRJNA493828_P_NODE_13898_length_314_cov_3.087137_g13479_i0 PRJNA493828 13898 314 3.087137 9.69361018 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 333 9.37e-87   NTclustered gi|909719645|gb|KT185625.1| 5778 g13479 i0 86.076 1.00636942675159 316 36 100 8 1 314 896 587 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 316 333 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22151511 22151511 PRJNA493828_P_NODE_45538_length_214_cov_6.936170_g45119_i0 PRJNA493828 45538 214 6.93617 14.8434038 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 265 2.22e-66   NTclustered gi|493091586|gb|KC161965.1| 5778 g45119 i0 100 48.1588785046729 143 0 67 0 69 211 1837 1695 Vermamoeba vermiformis strain CCAP 1534/16 18S ribosomal RNA gene, partial sequence blastn 10306 265 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23427352 23427352 PRJNA493828_P_NODE_43679_length_227_cov_4.337662_g43260_i0 PRJNA493828 43679 227 4.337662 9.84649274 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 420 4.81e-113   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g43260 i0 100 101.418502202643 227 0 100 0 1 227 1717 1491 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 23022 420 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;