RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA493828", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 27 ✖

tax_clade 1

  • Amoebozoa · 27 ✖

bioproject 1

  • PRJNA493828 · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
475113 475113 PRJNA493828_P_NODE_8341_length_390_cov_2.211356_g7926_i0 PRJNA493828 8341 390 2.211356 8.6242884 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 117 1.3e-21   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g7926 i0 90.805 22.5076923076923 87 8 22 0 107 193 12684 12598 Thecamoeba quadrilineata mitochondrion, complete genome blastn 8778 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
1749471 1749471 PRJNA493828_P_NODE_18242_length_295_cov_1.387387_g17823_i0 PRJNA493828 18242 295 1.387387 4.09279165 uncultured Vannellidae 544561 Discosea other_Eukaryota 342 1.45e-89   NTclustered gi|724028231|gb|KP099890.1| 544561 g17823 i0 87.708 38.3084745762712 301 27 99 8 1 294 841 544 Uncultured Vannellidae clone b17 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11301 342 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
3025834 3025834 PRJNA493828_P_NODE_43603_length_227_cov_8.571429_g43184_i0 PRJNA493828 43603 227 8.571429 19.45714383 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 315 2.3399999999999993e-81   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g43184 i0 91.525 32.2511013215859 236 9 100 7 1 227 1744 1977 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 7321 315 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
4301857 4301857 PRJNA493828_P_NODE_48384_length_197_cov_11.338710_g47965_i0 PRJNA493828 48384 197 11.33871 22.3372587 Vannella septentrionalis 197531 Discosea other_Eukaryota 353 4.18e-93   NTclustered gi|300078499|gb|GU001161.1| 197531 g47965 i0 99.485 73.7258883248731 194 1 98 0 4 197 978 1171 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14524 353 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
4934953 4934953 PRJNA493828_P_NODE_6524_length_434_cov_3.407202_g6124_i0 PRJNA493828 6524 434 3.407202 14.78725668 Cochliopodium 313557 Discosea other_Eukaryota 571 2.5999999999999992e-158   NTclustered gi|59876024|gb|AY785057.1| 313998 g6124 i0 90.519 63.9792626728111 443 27 100 13 1 434 268 704 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 27767 571 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
5578294 5578294 PRJNA493828_P_NODE_29845_length_256_cov_3.180328_g29426_i0 PRJNA493828 29845 256 3.180328 8.14163968 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 462 9.07e-126   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g29426 i0 99.219 55.2734375 256 2 100 0 1 256 1963 1708 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 14150 462 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
5578571 5578571 PRJNA493828_P_NODE_6245_length_442_cov_3.620596_g5846_i0 PRJNA493828 6245 442 3.620596 16.00303432 Vannella septentrionalis 197531 Discosea other_Eukaryota 361 6.25e-95   NTclustered gi|300078499|gb|GU001161.1| 197531 g5846 i0 92.49 57.4072398190045 253 17 57 2 36 287 2711 2962 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25374 361 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
5578615 5578615 PRJNA493828_P_NODE_8845_length_379_cov_4.683007_g8429_i0 PRJNA493828 8845 379 4.683007 17.74859653 uncultured Vannellidae 544561 Discosea other_Eukaryota 130 1.62e-25   NTclustered gi|724028223|gb|KP099882.1| 544561 g8429 i0 96.203 18.0395778364116 79 3 21 0 299 377 923 845 Uncultured Vannellidae clone b25 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6837 130 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
8127746 8127746 PRJNA493828_P_NODE_27887_length_262_cov_1.333333_g27468_i0 PRJNA493828 27887 262 1.333333 3.49333246 Ripella sp. 805 1217113 Discosea other_Eukaryota 399 7.409999999999998e-107   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g27468 i0 95.618 81.6717557251908 251 8 95 3 13 261 476 725 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 21398 399 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
8759453 8759453 PRJNA493828_P_NODE_25087_length_270_cov_2.350254_g24668_i0 PRJNA493828 25087 270 2.350254 6.3456858 Ripella 1217112 Discosea other_Eukaryota 459 1.2499999999999999e-124   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g24668 i0 97.407 100.718518518519 270 6 100 1 1 270 733 1001 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 27194 459 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
9402505 9402505 PRJNA493828_P_NODE_17728_length_298_cov_2.857778_g17309_i0 PRJNA493828 17728 298 2.857778 8.51617844 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 435 2.35e-117   NTclustered gi|62865939|gb|AY929914.1| 325077 g17309 i0 93.857 91.7147651006711 293 11 97 5 1 288 1347 1637 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 27331 435 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
9402793 9402793 PRJNA493828_P_NODE_35868_length_246_cov_0.890173_g35449_i0 PRJNA493828 35868 246 0.890173 2.18982558 Balamuthia mandrillaris 66527 Discosea other_Eukaryota 161 3.54e-35   NTclustered gi|2241228763|gb|OM994889.1| 66527 g35449 i0 82.796 64.3170731707317 186 26 74 6 27 209 10013 9831 Balamuthia mandrillaris strain KM-20 mitochondrion, complete genome blastn 15822 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Balamuthiidae Balamuthia Balamuthia mandrillaris
13228760 13228760 PRJNA493828_P_NODE_44331_length_225_cov_4.427632_g43912_i0 PRJNA493828 44331 225 4.427632 9.962172 Vannella septentrionalis 197531 Discosea other_Eukaryota 97.1 9.11e-16   NTclustered gi|300078499|gb|GU001161.1| 197531 g43912 i0 96.552 29.8133333333333 58 2 26 0 168 225 4166 4109 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6708 97.1 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14503486 14503486 PRJNA493828_P_NODE_32692_length_250_cov_1.231638_g32273_i0 PRJNA493828 32692 250 1.231638 3.079095 Paramoeba branchiphila 308475 Discosea other_Eukaryota 174 4.63e-39   NTclustered gi|226347442|gb|FJ807261.1| 308475 g32273 i0 80.435 84.24 230 41 91 4 8 235 629 856 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 21060 174 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
17051805 17051805 PRJNA493828_P_NODE_15434_length_310_cov_3.012658_g15015_i0 PRJNA493828 15434 310 3.012658 9.3392398 Thecamoeba vumurta 2893587 Discosea other_Eukaryota 209 1.62e-49   NTclustered gi|2130839581|gb|OL423099.1| 2893587 g15015 i0 92 19.2838709677419 150 11 48 1 1 150 1913 2061 Thecamoeba vumurta strain Ta130 small subunit ribosomal RNA gene, partial sequence blastn 5978 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba vumurta
17052365 17052365 PRJNA493828_P_NODE_8554_length_386_cov_0.929712_g8139_i0 PRJNA493828 8554 386 0.929712 3.58868832 Vannella septentrionalis 197531 Discosea other_Eukaryota 678 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g8139 i0 98.205 66.660621761658 390 3 100 2 1 386 2550 2939 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25731 678 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
18958312 18958312 PRJNA493828_P_NODE_5215_length_481_cov_3.409314_g4825_i0 PRJNA493828 5215 481 3.409314 16.39880034 Acanthamoeba 5754 Discosea other_Eukaryota 870 0   NTclustered gi|507401|gb|U07405.1|ACU07405 5755 g4825 i0 99.581 99.1954261954262 477 2 99 0 1 477 1179 703 Acanthamoeba castellanii CDC:0180:1 18S rRNA gene blastn 47713 870 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22151250 22151250 PRJNA493828_P_NODE_28018_length_261_cov_3.085106_g27599_i0 PRJNA493828 28018 261 3.085106 8.05212666 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 353 5.83e-93   NTclustered gi|330902866|gb|JF298259.1| 703021 g27599 i0 91.221 96.2452107279694 262 19 99 4 2 261 1064 805 Cochliopodium actinophorum clone 2101 actin gene, partial cds blastn 25120 353 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
24700568 24700568 PRJNA493828_P_NODE_23320_length_276_cov_1.576355_g22901_i0 PRJNA493828 23320 276 1.576355 4.3507398 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 409 1.31e-109   NTclustered gi|399764262|gb|JQ271773.1| 1105345 g22901 i0 93.525 30.7246376811594 278 12 99 5 2 276 664 938 Vexillifera bacillipedes strain P20Z 18S ribosomal RNA gene, partial sequence blastn 8480 409 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
24700614 24700614 PRJNA493828_P_NODE_26300_length_266_cov_3.559585_g25881_i0 PRJNA493828 26300 266 3.5595850000000002 9.4684961 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 368 2.13e-97   NTclustered gi|300078498|gb|GU001160.1| 5755 g25881 i0 91.575 21.4210526315789 273 13 100 8 1 266 6472 6203 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5698 368 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24701023 24701023 PRJNA493828_P_NODE_9360_length_370_cov_4.700337_g8943_i0 PRJNA493828 9360 370 4.700337 17.3912469 Vannella septentrionalis 197531 Discosea other_Eukaryota 381 3.949999999999999e-101   NTclustered gi|300078499|gb|GU001161.1| 197531 g8943 i0 87.097 70.0891891891892 341 39 91 5 3 339 2348 2687 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25933 381 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
27740601 27740601 PRJNA493828_P_NODE_37064_length_244_cov_1.678363_g36645_i0 PRJNA493828 37064 244 1.678363 4.09520572 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72.4 1.32e-12   NR XP_004367485.1 1257118 g36645 i0 45.1 1.00819672131148 82 44 99.6 1 2 244 278 359 XP_004367485.1 histidine acid phosphatase superfamily protein [Acanthamoeba castellanii str. Neff] diamond 246 72.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27992985 27992985 PRJNA493828_P_NODE_13325_length_320_cov_1.246964_g12906_i0 PRJNA493828 13325 320 1.246964 3.9902848 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 161 6.1e-49   NR XP_004339588.1 1257118 g12906 i0 88.2 0.796875 85 10 79.7 0 3 257 25 109 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 255 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29729178 29729178 PRJNA493828_P_NODE_25450_length_269_cov_2.178571_g25031_i0 PRJNA493828 25450 269 2.178571 5.86035599 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 59.7 4.25e-8   NR XP_004338074.1 1257118 g25031 i0 63.6 0.490706319702602 44 13 49.1 1 133 2 248 288 XP_004338074.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 132 59.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29839747 29839747 PRJNA493828_P_NODE_35671_length_246_cov_1.335260_g35252_i0 PRJNA493828 35671 246 1.33526 3.2847396 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.2 2.03e-9   NR AFK80364.1 5755 g35252 i0 42.7 3.54878048780488 75 36 89 2 235 17 256 325 AFK80364.1 cysteine proteinase 3, partial [Acanthamoeba castellanii] diamond 873 63.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30330138 30330138 PRJNA493828_P_NODE_22792_length_278_cov_1.102439_g22373_i0 PRJNA493828 22792 278 1.102439 3.06478042 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 116 3.55e-28   NR QVH35979.1 5755 g22373 i0 63.4 1.00359712230216 93 31 97.1 1 5 274 122 214 QVH35979.1 adenylyl cyclase-associated protein [Acanthamoeba castellanii] diamond 279 116 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30456398 30456398 PRJNA493828_P_NODE_34453_length_248_cov_0.880000_g34034_i0 PRJNA493828 34453 248 0.88 2.1824 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.5 1.91e-21   NR XP_004344861.1 1257118 g34034 i0 76.8 0.67741935483871 56 13 67.7 0 177 10 19 74 XP_004344861.1 eukaryotic translation initiation factor 4e1a-binding protein [Acanthamoeba castellanii str. Neff] diamond 168 90.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;